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gffutils
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GFF and GTF file manipulation and interconversion
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picard
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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
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singlecell_pnm
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✨ Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al
Jupyter Notebook
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