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viralmetagenome Public
Forked from nf-core/viralmetagenomeDetect iSNV and construct whole viral genomes from metagenomic samples
Nextflow MIT License UpdatedJan 14, 2026 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedJan 13, 2026 -
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test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedDec 19, 2025 -
clusty Public
Forked from refresh-bio/clustyC++ GNU General Public License v3.0 UpdatedDec 19, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedDec 10, 2025 -
lasvphylo Public
An nextflow pipeline for making LASV alignments
Groovy MIT License UpdatedDec 10, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedDec 10, 2025 -
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phylotree-rs Public
Forked from lucblassel/phylotree-rsRust crate to deal with phylogenetic trees
Rust GNU General Public License v3.0 UpdatedNov 14, 2025 -
phylo-rs Public
Forked from sriram98v/phylo-rsA Rust-based library for phylogenetic analysis and manipulation
Rust MIT License UpdatedNov 2, 2025 -
kaiju Public
Forked from bioinformatics-centre/kaijuFast taxonomic classification of metagenomic sequencing reads using a protein reference database
C GNU General Public License v3.0 UpdatedSep 29, 2025 -
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AlignmentViewer Public
Forked from ECV-Lab-KULeuven/AlignmentViewerA quick and simple fasta alignment viewer for python notebooks
Jupyter Notebook MIT License UpdatedSep 2, 2025 -
seraphim Public
Forked from sdellicour/seraphimR package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)
R GNU General Public License v3.0 UpdatedSep 1, 2025 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedAug 5, 2025 -
ECV-Lab-KULeuven.github.io Public
Forked from ECV-Lab-KULeuven/ECV-Lab-KULeuven.github.ioUpdatedJul 17, 2025 -
docker-beast-beagle-cuda Public
Forked from broadinstitute/beast-beagle-cudaBEAST+BEAGLE compiled with NVIDIA CUDA
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nf-test Public
Forked from askimed/nf-testSimple test framework for Nextflow pipelines
Java MIT License UpdatedJun 11, 2025 -
BarcodeForge Public
Forked from andersen-lab/BarcodeForgeHTML BSD 2-Clause "Simplified" License UpdatedMay 23, 2025 -
lasvdedup Public
A mini project that deduplicate lasv genomes - also my first snakemake playground
Python MIT License UpdatedMay 21, 2025 -
loculus Public
Forked from loculus-project/loculusAn open-source software package to power microbial genomic databases
TypeScript GNU Affero General Public License v3.0 UpdatedMay 21, 2025 -
vcfaligner Public
A mini pipeline that aligns the reference genomes of the VCFs and updates the locations of the vcf to follow those of the alignment
Nextflow MIT License UpdatedMay 20, 2025 -
awesome-virome Public
Forked from shandley/awesome-viromeA listing of software, tools and databases useful for virome analysis
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nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedApr 30, 2025 -
nextclade_data Public
Forked from nextstrain/nextclade_dataDatasets for https://github.com/nextstrain/nextclade
Python UpdatedApr 24, 2025 -
broad-viral-pipelines Public
Forked from broadinstitute/viral-pipelinesviral-ngs: complete pipelines
WDL Other UpdatedApr 23, 2025 -
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