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An open-source runtime for composable workflows. Great for AI agents and CI/CD.

Go 15,023 824 Updated Nov 26, 2025

Biomni: a general-purpose biomedical AI agent

Python 2,359 389 Updated Nov 24, 2025

litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexible and elegant API for interacting with Large Language Models…

Python 18 3 Updated Aug 13, 2025

Trends in single cell papers

Jupyter Notebook 16 Updated Sep 23, 2024

This project aims to extract text from PDF files using the outputs generated by the pdf-document-layout-analysis service. By leveraging the segmentation and classification capabilities of the under…

Makefile 36 4 Updated Feb 3, 2025

framework and guidelines for the many ways of doing OSS in science

2 1 Updated Sep 26, 2024

Fast citation reference parsing

Ruby 1,190 99 Updated May 11, 2025

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Python 17,513 806 Updated Nov 27, 2025

library supporting NLP and CV research on scientific papers

Python 785 63 Updated Nov 8, 2024

High accuracy RAG for answering questions from scientific documents with citations

Python 7,876 798 Updated Nov 26, 2025

Convert documents to structured data effortlessly. Unstructured is open-source ETL solution for transforming complex documents into clean, structured formats for language models. Visit our website …

HTML 13,282 1,087 Updated Nov 24, 2025

LlamaIndex is the leading framework for building LLM-powered agents over your data.

Python 45,492 6,564 Updated Nov 25, 2025

Tools for curating biomedical training data for large-scale language modeling

Python 484 118 Updated Dec 9, 2024

🦜🔗 The platform for reliable agents.

Python 120,627 19,884 Updated Nov 27, 2025

Table to Wikidata Mapping Language

TypeScript 27 11 Updated Feb 3, 2023

Happy Path Deployment Tool

Go 18 3 Updated Nov 24, 2025

NextJS version of Material Kit React by Creative Tim

JavaScript 359 645 Updated Aug 19, 2024

A unified framework for machine learning with time series

Python 9,375 1,725 Updated Nov 26, 2025

Mondo Disease Ontology

Jupyter Notebook 281 60 Updated Nov 26, 2025

Function for un- and re- doing the conversion from .ipynb ipython notebook to .py python file which Databricks performs every time it exports a notebook.

Python 16 7 Updated Nov 30, 2022
JavaScript 48 7 Updated Jun 12, 2022

Open Source Code for Extraction of Methods and Datasets from Biomedical Papers

Python 1 Updated Mar 2, 2022

Machine learning to text-mine coronavirus research for CoronaCentral.ai

Python 10 2 Updated Jan 10, 2024

Multi-label aviation safety narratives classification

Jupyter Notebook 15 6 Updated Jan 29, 2023

Use fastai-v2 with HuggingFace's pretrained transformers

Jupyter Notebook 110 20 Updated Sep 25, 2020

Extraction Toolkit

HTML 83 48 Updated Nov 18, 2021

Knowledge Graph Toolkit

Jupyter Notebook 407 60 Updated Jun 25, 2025

The fastai book, published as Jupyter Notebooks

Jupyter Notebook 24,098 9,290 Updated Aug 16, 2024

Label Studio is a multi-type data labeling and annotation tool with standardized output format

TypeScript 25,591 3,215 Updated Nov 27, 2025

Ontology Based Profile Matching

JavaScript 17 5 Updated May 20, 2022
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