Stars
Bioinformatics Tutorial Exercises for BC2023 at JCU
A list of awesome bioinformatics communities
A robust, extensible metagenomics pipeline
Metagenomic Identification of Gut Microbial Diagnostic and Prognostic Signatures of Epstein-Barr Virus-Associated Nasopharyngeal Carcinoma
log of virus-phage analysis in metagenomes contigs, collaboration with Josue
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
Module 5: Open Research Software and Open Source
Reproducible Science Curriculum Lesson for Version Control
The Data Exploration lesson in the Reproducible Science using Jupyter Notebooks curriculum
The Organization lesson for the Reproducible Science Curriculum
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
A curated list of awesome Bioinformatics libraries and software.
Accurate sample inference from amplicon data with single nucleotide resolution
Short data project from "take home projects" at codecademy site. During the project available data will be analyzed, cleaned up, and plotted 📊
Tool for Biodiversity-Ecosystem Functioning Assessment by Network Analysis
Biodiversity in National Parks Data Analysis with Python in Jupyter Notebook
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A curated collection of Nextflow implementation patterns
Classic hello world script in Nextflow language
A curated list of nextflow based pipelines
A DSL for data-driven computational pipelines