Lists (3)
Stars
12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.
Health Data Harmonisation Platform
A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
Comparisons of multiple different prophage predictions
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials,…
This tutorial playlist covers data structures and algorithms in python. Every tutorial has theory behind data structure or an algorithm, BIG O Complexity analysis and exercises that you can practic…
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than 100 days, follow your own pace. These videos m…
30 days of JavaScript programming challenge is a step-by-step guide to learn JavaScript programming language in 30 days. This challenge may take more than 100 days, please just follow your own pace…
resources for learning bioinformatics
Collection of bioinformatics training materials
A curated list of awesome Bioinformatics libraries and software.
🔬 Path to a free self-taught education in Bioinformatics!
Automatic RNA extraction protocol in OT-2 system (Opentrons)
Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
Foreign Contamination Screening caller scripts and documentation
a short-read polishing tool for long-read assemblies
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
A workflow tool to automatically run a bioinformatic pipeline
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)