A pure Python HDF5 file reader

Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2

A QT application for visualizing TEM data using HyperSpy as a backend.

Pty-Chi is a Python library for ptychographic image reconstruction.

Simple python code to interactively generate visualizations of moire patterns of hexagonal lattices such as magic angle bilayer graphene.

python packages for tcBFSTEM

One canvas API, multiple backends

Crystal structure container and parsers for structure formats.

Geometrical Phase Analysis with the HyperSpy framework.

Training materials used during the HyperSpy Workshop at the 2025 Microscopy and Microanalysis meeting

Interface ReadTheDocs and GitHub Actions

Distribution of LaueTools Package for Laue pattern analysis

A gpu based implementation of a K-D Tree Builder

Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.

Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.

Basic cryo-EM reconstruction functionality in JAX.

Sphinx extension for automatic generation of an example gallery

quantitative electron microscopy analysis toolkit

SmartScope is a framework for systematic evaluation of cryo-EM specimens

Image-processing software for cryo-electron microscopy

Data Plane Development Kit

A rewrite of the old legacy software "depends.exe" in C# for Windows devs to troubleshoot dll load dependencies issues.

MLX: An array framework for Apple silicon

TemCompanion: a tool to view, edit, filter, and convert TEM image files to tiff, png, and jpg.

Notebooks used during the 2025 Hyperspy Workshop at ePSIC, Diamond Light Source.

S/TEM Automated Nanoparticle Analysis

Astropy package for source detection and photometry. Maintainer: @larrybradley

PtyRAD: Ptychographic Reconstruction with Automatic Differentiation