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1. nf-core-rnaseq nf-core-rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow 1

2. sarek-aws-batch sarek-aws-batch Public archive

   Forked from nf-core/sarek

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   Nextflow

3. fetchngs fetchngs Public

   Forked from nf-core/fetchngs

   Pipeline to fetch metadata and raw FastQ files from public and private databases

   Groovy

4. nextflow-circleseq-tsailab nextflow-circleseq-tsailab Public

   Forked from tsailabSJ/circleseq

   Python

5. circdna circdna Public

   Forked from nf-core/circdna

   Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

   Python