IEP makes analyzing (molecular) segmentation traces easy and fast. All you need to have is some segmentation traces over time, as well as two target identities between which you would like to profi…

Describe and apply transformation on molecular structures and topologies

Adaptation of the excellent open book How to Think Like a Computer Scientist

COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3

Robust characterization of inside and outside in periodic spaces.

Software for computing the thickness-breadth balls of topological holes from a 3D volumetric object represented by polygonal mesh of its surface.

A simple drawing board using shaders on a canvas item for Godot game engine

improper_dihedrals

C++ library implementing the Signed Heat Method for computing robust signed distance fields (SDFs) to triangle meshes, polygon meshes, and point clouds in 3D.

Applied 3D geometry in C++, with a focus on surface meshes.

Molecular dynamics of confined multivesicular bodies.

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Density based object completion over PBC.