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1. rnaseq rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

   Nextflow

2. abra-nf abra-nf Public

   Forked from IARCbioinfo/abra-nf

   Nextflow pipeline for ABRA (Assembly Based ReAligner)

   Nextflow

3. alignment-nf alignment-nf Public

   Forked from IARCbioinfo/alignment-nf

   Whole Exome/Whole Genome Sequencing alignment pipeline

   Nextflow

4. gatk4-HaplotypeCaller-nf gatk4-HaplotypeCaller-nf Public

   Forked from IARCbioinfo/gatk4-HaplotypeCaller-nf

   GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping.

   Nextflow

5. gatk4-GenotypeGVCFs-nf gatk4-GenotypeGVCFs-nf Public

   Forked from IARCbioinfo/gatk4-GenotypeGVCFs-nf

   Joint calling of gVCF, following GATK4 Best Practices

   Nextflow

6. rsmartsheet rsmartsheet Public

   Forked from elias-jhsph/rsmartsheet

   This is an R package that takes advantage of httr to interface with Smartsheet

   R