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Documentation for the OpenSAFELY platform

Python 42 9 Updated Nov 7, 2025

A fast type checker and language server for Python

Rust 4,275 180 Updated Nov 10, 2025

Tidy R programming with the OMOP common data model

Lua 17 1 Updated Nov 5, 2025

5 Safe TES Analysis Tools (Containers to run alanlysis)

1 Updated Oct 17, 2025

ODmapper - Omics Data Mapping and Harmonizer

JavaScript 1 Updated Apr 24, 2025

ODharmonizer: Enabling Omics Data Harmonization in OMOP CDM

JavaScript 1 Updated Sep 5, 2025

Federated Node service for PHEMS project

Python 11 3 Updated Nov 10, 2025
R 3 Updated Oct 30, 2025

A JSON Schema Viewer for any JSON Schema on earth.

TypeScript 169 31 Updated Oct 7, 2025

Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models

Python 16 3 Updated Nov 6, 2025

omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

R 16 3 Updated Jul 1, 2025

A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM

Java 8 3 Updated Nov 10, 2025

This repository contains the 2nd edition of the Book

TeX 4 Updated Sep 8, 2025

Proxy service for injecting middleware into GA4GH TES requests

Python 9 6 Updated Oct 22, 2025

GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes

Python 43 33 Updated Jan 9, 2025

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

Python 52 9 Updated Nov 5, 2025

Course materials for OHDSI ETL tutorial

R 52 17 Updated Oct 7, 2025

Hutch is part of an application stack for Federated Activities, such as Analytics, Data Discovery, or Machine Learning.

MDX 4 1 Updated Nov 10, 2025

A curated list of open source OMOP tools and resources

1 Updated Nov 6, 2025

Securing open-source package ecosystems by originating, validating, and augmenting build attestations.

Go 666 37 Updated Nov 8, 2025

notes for software engineers getting up to speed on new AI developments. Serves as datastore for https://latent.space writing, and product brainstorming, but has cleaned up canonical references und…

HTML 6,088 526 Updated Sep 15, 2025

📖 Heuristics for effective management

5,398 444 Updated Jul 25, 2024

Mega list of 1 on 1 meeting questions compiled from a variety to sources

JavaScript 9,609 632 Updated Mar 18, 2023

Questions to ask the company during your interview

28,409 2,128 Updated Feb 19, 2025

An extremely fast Python linter and code formatter, written in Rust.

Rust 43,674 1,603 Updated Nov 10, 2025

Data2Evidence is an end-to-end solution for management and analysis of OMOP data - https://data2evidence.org

TypeScript 25 6 Updated Nov 10, 2025

Streamlined Data Transformation to OMOP

MDX 6 Updated Oct 31, 2025

Unified repository for the GA4GH Beacon v2 API standard

32 22 Updated Oct 23, 2025
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