PangeBlocks for Human Genomes
| Flag | Description |
|---|---|
--fasta, -f |
Path to the input FASTA file |
-k |
k-mer size for Jaccard index |
Minigraph and Graphaligner are expected to be available in the PATH.
The sequences are expected to be given in a single FASTA file like this:
>seq1
ATCGATCGATCG
>seq2
GCTAGCTA
>seq3
TTATCGATCGAATCThe graph is produced on stdout with the gfa format.