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Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Python 1,022 355 Updated Aug 24, 2024

Python package with helper tools for the nf-core community.

Python 285 223 Updated Dec 13, 2025

The Ensembl Core Perl API and SQL schema

Perl 83 79 Updated Sep 25, 2025

Aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript 1,400 645 Updated Dec 23, 2025

Official git repository for Biopython (originally converted from CVS)

Python 4,847 1,854 Updated Dec 15, 2025

Tools (written in C using htslib) for manipulating next-generation sequencing data

C 1,810 605 Updated Dec 18, 2025

Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/

Nextflow 19 7 Updated Mar 24, 2019