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[NeurIPS 2023 Oral] Quilt-1M: One Million Image-Text Pairs for Histopathology.
upload big files to Zenodo using cURL, jq and bash
OneCAT: Decoder-Only Auto-Regressive Model for Unified Understanding and Generation
Taming Transformers for High-Resolution Image Synthesis
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".
[NeurIPS 2024 Best Paper Award][GPT beats diffusion🔥] [scaling laws in visual generation📈] Official impl. of "Visual Autoregressive Modeling: Scalable Image Generation via Next-Scale Prediction". A…
Source Code
QuPath extension to interactively align images
Automatically crawl arXiv papers daily and summarize them using AI. Illustrating them using GitHub Pages.
This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: from TCGA to Hospital Scale"
Implementation of Archetypal Analysis algorithms
A visual–omics foundation model to bridge histopathology with spatial transcriptomics
Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that …
Spatial alignment of single cell transcriptomic data.
Archetypal Analysis network (AAnet)
[CVPR 2025 Best Paper Award] VGGT: Visual Geometry Grounded Transformer
Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
Genome modeling and design across all domains of life
Fully open reproduction of DeepSeek-R1
Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
Interoperability between SpatialData and the Xenium Explorer