A place to submit conda recipes before they become fully fledged conda-forge feedstocks

This is the development home of the workflow management system Snakemake. For general information, see

Cloud-native genomic dataframes and batch computing

Source code for JBrowse 2, a modern React-based genome browser

This is the development home of the Snakemake wrapper repository, see

A conda-smithy repository for pretty_html_table.

Tools to process and analyze deep sequencing data.

Aggregate results from bioinformatics analyses across many samples into a single report.

Performant Pythonic GenomicRanges

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.…

Package for fetching metadata and downloading data from SRA/ENA/GEO

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows. Works equally easy with public as local data.

A statically generated catalog of available Snakemake workflows

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Phylogenetic orthology inference for comparative genomics

Single Cell Epigenome-based Inference of Activity

Test data for MultiQC. See https://github.com/ewels/MultiQC

Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

The hackable text editor

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

Download genomes the easy way.