Research code accompanying AlphaGenome

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

An R package for ECM molecule annotation, classification, and analysis

List of software packages for multi-omics analysis

Case-Only Burden Test

Toolbox for biostatistics and clinical data analysis in R. Developed by the biostatistics team at Laboratorios Sophia S.A. de C.V.

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…

Plot Protein: Visualization of Mutations

Assembly and binning of metagenomes

Biological file format specimens for testing packages, and functions to assist in testing.

MOTL uses transfer learning to infer latent factors for small multi-omics target datasets with respect to those inferred from a large heterogeneous learning dataset.

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

GWAS Plotter software that can do Manhattan Plots and QTL Plots

Code used to analyse WGS data of giraffe in Coimbra et al. 2021

Structural variant and indel caller for mapped sequencing data

STR genotyping with WGS and Amplicon/Target sequencing data

The Picontigotron is a small project to illustrate genome assembly on a Raspberry Pi

Structural variant toolkit for VCFs

Small game for point-neuron simulation

Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis

R package for the analysis of massive SNP arrays.

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

A tool to genotype MUC1 coding VNTR in ADTKD

Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery

Discovering known and novel miRNAs from small RNA sequencing data

A Toolset for Chromosome X-Wide Association Studies