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Showing results

Structural variant and indel caller for mapped sequencing data

C++ 442 154 Updated Oct 11, 2025

STR genotyping with WGS and Amplicon/Target sequencing data

C 15 3 Updated Jul 14, 2025

The Picontigotron is a small project to illustrate genome assembly on a Raspberry Pi

3 1 Updated Nov 27, 2014

Structural variant toolkit for VCFs

Python 380 55 Updated Oct 11, 2025

Small game for point-neuron simulation

Python 2 Updated Sep 2, 2025

Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis

R 28 13 Updated May 2, 2024

R package for the analysis of massive SNP arrays.

R 210 45 Updated Aug 21, 2025

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

C 76 2 Updated Sep 20, 2025

A tool to genotype MUC1 coding VNTR in ADTKD

Python 7 4 Updated Oct 2, 2025

Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery

Python 12 2 Updated Sep 24, 2025

Discovering known and novel miRNAs from small RNA sequencing data

Perl 154 50 Updated Aug 27, 2024

A Toolset for Chromosome X-Wide Association Studies

C++ 12 4 Updated May 1, 2018

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 2,193 353 Updated Oct 14, 2025

Guide pour l'analyse de données d'enquêtes avec R

HTML 18 6 Updated Oct 13, 2025
Python 79 13 Updated Jun 22, 2025

Documentation on new GWAS Summary Statistics Standard

TeX 23 2 Updated Aug 14, 2024

Modelling human health trajectories using generative transformers

Jupyter Notebook 323 66 Updated Oct 13, 2025

Color palettes for gnuplot

440 73 Updated Jan 12, 2022

Multi-sample somatic variant caller

R 52 15 Updated Jan 27, 2022

GWAS Tutorial for Beginners

Jupyter Notebook 335 87 Updated Sep 28, 2025

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Python 124 26 Updated Dec 9, 2024

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

Python 15 1 Updated Oct 14, 2025

Work with trained factor models in Python

Jupyter Notebook 35 14 Updated Oct 22, 2024

Pretty heatmaps

R 265 88 Updated Jun 5, 2025

Summer School Multi-omics Data Analysis and Integration

HTML 2 4 Updated Sep 7, 2023

CAncer Standards Long-read Evaluation

29 Updated Feb 13, 2025

Multi-Omics Factor Analysis

R 353 59 Updated Jun 29, 2024

R package to infer biological activities from omics data using a collection of methods.

R 268 28 Updated Mar 12, 2025

A curated collection of Nextflow implementation patterns

Nextflow 365 73 Updated Nov 21, 2023

A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

30 27 Updated Dec 5, 2023
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