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A curated list of awesome R packages, frameworks and software.

R 6,344 1,512 Updated Sep 18, 2025

A curated list of awesome network analysis resources.

R 3,873 623 Updated Jul 24, 2025

Examples and guides for using the OpenAI API

Jupyter Notebook 68,982 11,524 Updated Oct 31, 2025

Sassy 'UML' Diagrams for R

JavaScript 220 18 Updated Dec 11, 2024

The Metabolomics Standards Initiative (MSI), Core Information For Metabolomics Reporting (CIMR)

9 Updated Feb 17, 2020

Repository for the schemas implementing the Chronobiology Data Standards

Jupyter Notebook 3 Updated Mar 25, 2023

Linking GWAS data to analytical tools in R

R 148 41 Updated May 20, 2022

An interactive PDF reader.

Python 431 58 Updated Jul 19, 2023

Make Complex Heatmaps

R 1,430 241 Updated Jun 23, 2025

A collection of python functions for converting data dictionaries between YAML and TSV formats.

Python 4 2 Updated Mar 5, 2025
Jupyter Notebook 8 8 Updated Sep 16, 2025

Documentation for the TOPMed DCC's harmonized phenotypes

R 8 4 Updated Oct 4, 2021

code and files for SPARC curation workflows

Python 14 14 Updated Oct 27, 2025

Collection of helpful scripts for mapping, ETL, automation and others related to PlanX bioinformatics team. It includes tools for data model and data dictionary creation as well as data submission.

Python 4 4 Updated Oct 17, 2022

Data dictionary for the Blood PAC Commons

Python 5 2 Updated Aug 29, 2025

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

R 809 162 Updated Aug 4, 2024

Index service server

Python 26 21 Updated Oct 29, 2025

Data dictionary for NIAID Commons project

Python 2 4 Updated Jul 18, 2023

SKOS representation of the controlled vocabularies of the DDI Alliance. See: http://www.ddialliance.org/controlled-vocabularies

HTML 4 1 Updated Mar 2, 2016

🔬 Alignment workflow for Kids-First DRC

Common Workflow Language 11 7 Updated Aug 7, 2025
Python 6 8 Updated Apr 2, 2025

API for herding data submissions

Python 12 19 Updated Oct 23, 2025

Data dictionary for the GDC

Python 54 37 Updated Sep 3, 2025

Translation layer between the GDC Data Dictionary and psqlgraph

Python 28 3 Updated Jun 27, 2025

Schema and generated objects for biolink data model and upper ontology

Python 209 82 Updated Oct 31, 2025

R package for MetaboAnalyst

R 361 167 Updated Oct 29, 2025

Metabolomics Tools for Galaxy

HTML 21 9 Updated Nov 22, 2016