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Commits on Jun 12, 2023

• Merge pull request #44 from Npaffen/master - closes #43

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  yannickwurm

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Commits on Jun 7, 2023

• Update install.sh

  Npaffen

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Commits on May 29, 2021

• Outdent list of citations

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  yeban

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• Add new citations; switch to numbered list

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  yeban

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• Merge remote-tracking branch 'cmatKhan/master'

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  yeban

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• add shebang to scripts/install.sh

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  cmatKhan

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Commits on Dec 30, 2020

• Add one more citation; use title case for citations

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  yeban

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Commits on Dec 3, 2020

• Add new citations of flo to README

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  yeban

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Commits on Nov 23, 2020

• Add CITATION.cff

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Commits on Nov 16, 2020

• Better explain unmapped.txt output file in README

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  yeban

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• Print helpful message instead of stacktrace if cleaning lifted gff fails

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  yeban

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• Ask to install BioRuby on stderr

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  yeban

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Commits on Nov 11, 2020

• gff_recover.rb should exit if bioruby is not installed!

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  yeban

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Commits on Aug 20, 2019

• Add 3 new mentions of flo

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  yeban

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• Ask to cite MolEcol paper and fix a typo

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  yeban

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Commits on Oct 10, 2018

• Add a subset of augustus 3.3 output for testing gff_remove_feats.rb

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  yeban

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Commits on Sep 30, 2018

• Revise gff feature removal script

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  yeban

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Commits on Jul 22, 2018

• Fix install script

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  yeban

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Commits on Jul 14, 2018

• Expand paths before adding to path

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• Expand path to source and target fa

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Commits on Jun 25, 2018

• colons

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  yeban

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• Reverse chronological order for citations (year only)

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  yeban

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• Update citations

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  yeban

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• Check Linux or Mac for downloading UCSC tools

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  yeban

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• Expand README

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• Highlight name of generated chain file in README

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  yeban

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• Alternatively, the input file may not be in GFF3 format

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  yeban

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• Print help if liftOver's output is empty and exit

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  yeban

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• Add script to get longest transcript per gene from a GFF file

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  yeban

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• gff_remove_feats.rb: Print help unless both params specified

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  yeban

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Commits on Apr 25, 2018

• max threads = num scaffolds in target

  yannickwurm

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Commits on Oct 29, 2017

• gff_compare.rb: sort before extractfeat

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  yeban

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Commits on Oct 17, 2017

• Use basename of input gff for creating output dir

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  yeban

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Commits on Jul 14, 2017

• Suggest lowering minIdentity for inter-species liftover.

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  yeban

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• Fix invocation of gff_compare.rb.

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  yeban

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