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Add primary root timelapse pipeline #112

@eberrigan

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@eberrigan
  • We have timelapse images. Timelapse images should be ordered by time. We can make a helper function that loads images with a certain naming format and arranges them into an h5 file ordered by time.
  • Then sleap predictions (using sleap package, not this one) will be in order once predicted on.
  • The timelapse pipeline will be interested in looking at individual plant changes over time.
  • The data we currently have is primary root only, so this might depend on the Add PrimaryRootPipeline #110 and Add multiple primary root pipeline #114 so that code is not redundant.
  • We can (optionally) get primary root related traits on each frame using the PrimaryRootPipeline and have that output separately.
  • The timelapse pipeline should be looking at the change in traits over time and for that reason can use sleap tracking. Let's focus on the traits that Suyash wants for now, and continue to add to the timelapse traits as we go.

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