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Commits on Jun 25, 2020

• Update README.md

  gonzaparra

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Commits on Jun 14, 2019

• Merge pull request #13 from soedinglab/scaffold

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  galicae

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  33a5064

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Commits on May 10, 2019

• Merge pull request #12 from soedinglab/projection

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  galicae

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  1710e3c

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Commits on May 9, 2019

• updated documentation

  galicae

  committed
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Commits on May 6, 2019

• added random seed to scaffold tree calc

  galicae

  committed
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Commits on May 3, 2019

• added node size and color choice to plot_flattened

  galicae

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Commits on May 2, 2019

• Update Pseudotime.R

  gonzaparra

  authored
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• Update PlotTree.R

  gonzaparra

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• Update PlotTree.R

  gonzaparra

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  cc8023f

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• updated notebooks

  galicae

  committed
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Commits on Apr 3, 2019

• Paul and Guo hyperparams notebooks ready!

  galicae

  committed
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Commits on Apr 2, 2019

• added R notebook where we compare hyperparameters

  galicae

  committed
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Commits on Mar 7, 2019

• location of tmp files in scaffold calculation is now a parameter

  galicae

  committed
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Commits on Feb 25, 2019

• removed debug print statement

  galicae

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• now deletes tmp files created in the scaffold tree calculation process

  galicae

  committed
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Commits on Feb 20, 2019

• found bug in node assignment when initializing elastic tree

  galicae

  committed
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Commits on Nov 23, 2018

• removed absolute paths, added Treutlein cell annotation

  galicae

  committed
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Commits on Nov 22, 2018

• adding system dependencies so i don't forget them

  galicae

  committed
  a8e734c

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• added LSD dependency

  galicae

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• docker now only contains the python stuff.

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  galicae

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Commits on Nov 20, 2018

• fixed entrypoint, trying to get scripts to read input files

  galicae

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• trying out mounting

  galicae

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Commits on Nov 19, 2018

• creating docker container

  galicae

  committed
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Commits on Oct 9, 2018

• added more documentation to plot_flattened_tree, fixed small bug

  galicae

  committed
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• added wrapper for destiny::DiffusionMap

  galicae

  committed
  ae79c71

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• roxygen recognition for inflate_elastic_tree, documentation for latest additions

  galicae

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Commits on Oct 4, 2018

• added data location of temp files to scaffold tree

  galicae

  authored
  3f9b5df

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• 'reduced' parameter in scaffold tree now sets the number of clusters for K-means

  galicae

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Commits on Sep 28, 2018

• added plotting of flat trees with pies

  galicae

  committed
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Commits on Sep 27, 2018

• added inflation function to reverse k means reduction

  galicae

  committed
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• scaffold tree python/r integration

  galicae

  committed
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• added k-means reduction

  galicae

  committed
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• replaced tabs with spaces

  galicae

  committed
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• reorganized imports

  galicae

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• bringing scaffold tree to status of main

  galicae

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