TReconLM: Trace reconstruction using next-token prediction for DNA data storage.

Processed data tables and code for manuscript

A dataset of real DNA traces for benchmarking trace reconstruction algorithms

Pairwise Sequence Alignment Library

Sturgeon is a CNS neural network classifier

Deep learning model and dashboard for automated detection of capture phases in nanopore protein sequencing data.

A comprehensive benchmarking framework for raw nanopore signal analysis, as described by Eris et al. (https://arxiv.org/pdf/2510.03629)

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

an R package for analyzing polyA tails after dorado basecalling.

Evaluation of Nanopore direct RNA sequencing updates for modification detectionn

Detection of different source of damage through Nanopore sequencing

The Dinopore code with python version

single current blockade analyzer, good for finding secodary peaks.

Detection of Nm sites from Nanopore DRS data

original hoffmann pipeline, with changes for portability

Pipeline for NanoNASC-seq datasets.

CircRM, a nanopore sequencing–based computational method for profiling RNA modifications in circRNAs at single-base and single-molecule resolution. By integrating circRNA detection, read-level meth…

Workspace of the Development of Nanopore-based Single-Cell Full-Length Newly Synthesized RNA Sequencing Technology.

Deep learning for RNA Modification

This repository contains scripts for preprocessing Nanopore DNA sequencing data for training and validating BiGRU Recurrent Nerual Neatworks for detecting BrdU, Jupyter Notebooks for model training…

Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power