I am ruining MIPGEN with very basic options, but in my output ....picked_mips.txt file does not contain any number in Ext_Probe_copy & lig_probe_copy getting only 0.
(../MIPGEN/mipgen -regions_to_scan practice_genes.bed -project_name practice_design -min_capture_size 162 -max_capture_size 162 -bwa_genome_index //human_g1k_v37.fa)