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A general purpose parser to produce grammars of single-sequence RNA secondary structure

C 4 3 Updated Jul 3, 2025
C++ 1 3 Updated Oct 16, 2024

Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential

C++ 18 5 Updated Apr 3, 2021
JavaScript 2 Updated Jul 15, 2024

Visualization Application for RNA

Java 8 7 Updated Jun 3, 2024
Python 5 1 Updated Nov 6, 2025
Python 47 8 Updated Dec 10, 2024

🌻 Flexible and fast ZSH plugin manager

Shell 4,129 146 Updated Oct 14, 2025

An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs

C++ 11 6 Updated Jun 28, 2024

SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping

Jupyter Notebook 90 23 Updated Jan 14, 2022

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

Kotlin 162 10 Updated Nov 24, 2023

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

Perl 33 9 Updated Apr 3, 2021

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

C++ 182 51 Updated Apr 4, 2024

Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities

C++ 30 22 Updated May 24, 2024

The ViennaRNA Package

C 370 88 Updated Jul 21, 2025

Draw RNA secondary structures

JavaScript 10 6 Updated Aug 20, 2021

Python for chemoinformatics

Jupyter Notebook 230 91 Updated Jun 26, 2021

Lightweight C++ command line option parser

C++ 4,608 626 Updated Nov 11, 2025