Stars
A Model Context Protocol (MCP) server that provides conversational interface for the exploration and analysis of RDF (Turtle) based Knowledge Graph in Local File mode or SPARQL Endpoint mode.
LLM-driven curation assist tool
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity
BOLD Data Portal is a web-based application for hosting and managing DNA barcode data. It provides a platform for researchers and organizations to store, search, and retrieve barcode records, explo…
Enhance Tesseract OCR output for scanned PDFs by applying Large Language Model (LLM) corrections.
Digital Collections: IIIF Image Server
Barcode Core Data Model - a data standard aimed at significantly enhancing the organization, sharing, and utilization of DNA barcode data within the biodiversity science community
Code and steps used to generate the Data Citation Corpus dump file
Versatile open-source tool for microbiome analysis
Data Citation Corpus user feedback
Initiated by the University of Michigan Herbarium, VoucherVision harnesses the power of large language models (LLMs) to transform the transcription process of natural history specimen labels.
Demo app for parsing funders from funding statements and matching them to ROR IDs
A collection of data and code for training models and experimenting with automatically matching affiliation strings to ROR IDs.
GPU-accelerated DNA barcode classification
GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Excel documents, URLs etc.
TaxoNERD : recognizing taxonomic entities using deep models
Species name recognition and normalization software.
BERT for Biodiversity domain including 2 downstream tasks: Named Entity Recognition (NER) and Relation Extraction (RE)
Community discussions and feedback about Make Data Count infrastructure
RDF in-memory quad store implementation using PDO and SQLite.
Intertwingler is an application server for creating dense hypermedia networks.
A tool for exploring large trees in the browser
This repository holds a catalog of identification resources, complete with bibliographical metadata and metadata on the type of key, the taxon/taxa it distinguishes, the geographical region it appl…
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Miller columns for React
Proxy a web site to preview the redirections ahead of it being transitioned to GOV.UK