Changes

Version 2.3.5 (2020-12-30)

We closed a total of 33 issues (enhancements and bug fixes) through 13 pull requests, since our last release on 2020-07-11.

Issues Closed

• Bump to 2.3.5 (#156)
• Bump version (#155)
• Prepping for 2.3.2 release. (#154)
• Issue with Numba < 0.47 (#142)
• parallel_crand_ ValueError (#146)
• fix concatenation for random statistics (#147)
• Dropping 3.6 from testing. (#152)
• Unexpected LISA results for polygons contained by another polygon (#153)
• CI: update conda setup (#151)
• Bump codecov/codecov-action from v1.0.14 to v1.0.15 (#150)
• Bump codecov/codecov-action from v1.0.13 to v1.0.14 (#149)
• Bump codecov/codecov-action from v1.0.12 to v1.0.13 (#144)
• Spatial cross-correlations? (#141)
• Bump codecov/codecov-action from v1.0.11 to v1.0.12 (#140)
• Bump codecov/codecov-action from v1.0.10 to v1.0.11 (#138)
• README.md missing from 2.3.0 on pypi (#136)
• [BUG] remove README.rst (#137)
• [DOC] Update for 2.30 (#135)
• Release notes for 2.3.0 (#127)
• (BUG) missing comma in setup.py (#134)

Pull Requests

• Bump to 2.3.5 (#156)
• Bump version (#155)
• Prepping for 2.3.2 release. (#154)
• fix concatenation for random statistics (#147)
• Dropping 3.6 from testing. (#152)
• CI: update conda setup (#151)
• Bump codecov/codecov-action from v1.0.13 to v1.0.14 (#149)
• Bump codecov/codecov-action from v1.0.12 to v1.0.13 (#144)
• Bump codecov/codecov-action from v1.0.11 to v1.0.12 (#140)
• Bump codecov/codecov-action from v1.0.10 to v1.0.11 (#138)
• [BUG] remove README.rst (#137)
• [DOC] Update for 2.30 (#135)
• (BUG) missing comma in setup.py (#134)

The following individuals contributed to this release:

• Serge Rey
• Martin Fleischmann
• James Gaboardi
• Dependabot[Bot]
• Levi John Wolf

Changes

Version 2.3.2 (2020-12-30)

We closed a total of 29 issues (enhancements and bug fixes) through 11 pull requests, since our last release on 2020-07-11.

Issues Closed

• Prepping for 2.3.2 release. (#154)
• Issue with Numba < 0.47 (#142)
• parallel_crand_ ValueError (#146)
• fix concatenation for random statistics (#147)
• Dropping 3.6 from testing. (#152)
• Unexpected LISA results for polygons contained by another polygon (#153)
• CI: update conda setup (#151)
• Bump codecov/codecov-action from v1.0.14 to v1.0.15 (#150)
• Bump codecov/codecov-action from v1.0.13 to v1.0.14 (#149)
• Bump codecov/codecov-action from v1.0.12 to v1.0.13 (#144)
• Spatial cross-correlations? (#141)
• Bump codecov/codecov-action from v1.0.11 to v1.0.12 (#140)
• Bump codecov/codecov-action from v1.0.10 to v1.0.11 (#138)
• README.md missing from 2.3.0 on pypi (#136)
• [BUG] remove README.rst (#137)
• [DOC] Update for 2.30 (#135)
• Release notes for 2.3.0 (#127)
• (BUG) missing comma in setup.py (#134)

Pull Requests

• Prepping for 2.3.2 release. (#154)
• fix concatenation for random statistics (#147)
• Dropping 3.6 from testing. (#152)
• CI: update conda setup (#151)
• Bump codecov/codecov-action from v1.0.13 to v1.0.14 (#149)
• Bump codecov/codecov-action from v1.0.12 to v1.0.13 (#144)
• Bump codecov/codecov-action from v1.0.11 to v1.0.12 (#140)
• Bump codecov/codecov-action from v1.0.10 to v1.0.11 (#138)
• [BUG] remove README.rst (#137)
• [DOC] Update for 2.30 (#135)
• (BUG) missing comma in setup.py (#134)

The following individuals contributed to this release:

• Serge Rey
• Serge
• Martin Fleischmann
• James Gaboardi
• Dependabot[Bot]
• Levi John Wolf

This is a small bug fix release for an issue on pypi.

See release notes for 2.3.0 for detailed functionality in the latest esda.

esda

ESDA is an open-source Python library for the exploratory analysis of spatial data. A subpackage of PySAL (Python Spatial Analysis Library), esda includes methods for global and local spatial autocorrelation analysis. See the tutorial for use cases.

Version 2.3.0 (2020-07-05)

Major Enhancements

• Highly performant multi-core, numba-based conditional permutation inference for local autocorrelation statistics (#116)
• Adbscan: an extension of the original DBSCAN algorithm that creates an ensemble of solutions generated by running DBSCAN on a random subset and "extending" the solution to the rest of the sample through nearest-neighbor regression (see Arribas-Bel, Garcia-Lopez & Viladecans-Marsal, 2020 for more details). (#120)

Detailed Changes

We closed a total of 38 issues (enhancements and bug fixes) through 14 pull requests, since our last release on 2020-02-01.

Issues Closed

• permutation inference performance using numba (#116)
• Adbscan fix (#120)
• BUG: fix join_count contingency table (#124)
• Preferred style format of new ESDA estimators (#118)
• G_Local returns unexpectedly low z_sim for what should be a hotspot (#112)
• [WIP]: initial commit of ripley in numpy-oriented style (#115)
• Tweak README.md (#117)
• Memory efficient conditional permutation for LISA (#113)
• ENH: More efficient Geary implementation with new test data (#114)
• Develop separate notebooks for functionalilty (#84)
• by_col is failing in test_by_col due to deprecation of from_item (#100)
• Join count tail-ness (#48)
• Noisy imports on 3.8 (#99)
• DeprecationWarning when running spatial smoothing (#111)
• ADBSCAN (#94)
• DOC: fixing link in geosilhouettes notebook (#110)
• Allow failures on 3.8 when pulling from git for testing. (#108)
• Docs for esda not reachable (#107)
• Tutorial (#106)
• Tutorial (#105)
• BUG: don't delete .nojekyll (#104)
• Docs (#103)
• REL: 2.2.1 bf release (#102)
• Fixes for pandas deprecation and 3.8 verbosity (#101)

Pull Requests

• permutation inference performance using numba (#116)
• Adbscan fix (#120)
• BUG: fix join_count contingency table (#124)
• Tweak README.md (#117)
• ENH: More efficient Geary implementation with new test data (#114)
• ADBSCAN (#94)
• DOC: fixing link in geosilhouettes notebook (#110)
• Allow failures on 3.8 when pulling from git for testing. (#108)
• Tutorial (#106)
• Tutorial (#105)
• BUG: don't delete .nojekyll (#104)
• Docs (#103)
• REL: 2.2.1 bf release (#102)
• Fixes for pandas deprecation and 3.8 verbosity (#101)

The following individuals contributed to this release:

• Serge Rey
• Levi John Wolf
• James Gaboardi
• Dani Arribas-Bel
• Jeffery Sauer
• Eli Knaap

Version 2.2.1 (2020-02-01)

This is a bug fix release for Pandas 1.0.

We closed a total of 10 issues (enhancements and bug fixes) through 5 pull requests, since our last release on 2019-12-18.

Issues Closed

• Fixes for pandas deprecation and 3.8 verbosity (#101)
• ENH: adjust tests for new libpysal.examples (#98)
• update docs (#97)
• DOC: changelog update (#96)
• ENH: bumping version and handle array creation error in join counts (#95)

Pull Requests

• Fixes for pandas deprecation and 3.8 verbosity (#101)
• ENH: adjust tests for new libpysal.examples (#98)
• update docs (#97)
• DOC: changelog update (#96)
• ENH: bumping version and handle array creation error in join counts (#95)

The following individuals contributed to this release:

• Serge Rey
• Eli Knaap

Changes

Version 2.2.0 (2019-12-18)

We closed a total of 50 issues (enhancements and bug fixes) through 18 pull requests, since our last release on 2019-07-01.

Issues Closed

• ENH: bumping version and handle array creation error in join counts (#95)
• development guidelines link in README.md and README.rst (#87)
• PYSAL_PYPI is not defined in .travis.yml (#92)
• addressing #92 -- .travis.yml issue (#93)
• resolving dev guidelines link (#88)
• Update officially supported Python versions (#80)
• ENH - Join count tails (#74)
• DOC: Have notebooks show output in the src (#83)
• no output in documentation notebooks (#82)
• officially supported Python versions (#81)
• add docs badge (#79)
• docs are failing (#77)
• (bug, docs) fix docs building (#78)
• PySAL development guidelines link broken in pysal/esda (#73)
• fixed broken development guidelines link, issue #73 (#76)
• Data missing from example notebooks (#49)
• added smaup notebook missing data, in addition to sjoin, and groupby code for issue #49 (#75)
• BUG: setup.py in 2.0.1 is broken (#46)
• join_counts should provide a pandas-style cross-tab of bb,bw,ww. (#47)
• ENH: Contingency tables for Join Counts and related statistics (#71)
• [WIP] add geosilhouette code (#50)
• standardize option in Gamma statistic should be a bool. (#59)
• deprecate standardize option (#70)
• esda 2.0.1 is release on github, but not on pypi (#56)
• REL: 2.1.1 (#69)
• REL: update setup and add Lee statistics (#68)
• correcting typo from (#60) (#67)
• typo caused by vim insert issue (#60)
• add Lee (2001) local spatial Pearson (#51)
• Use README.rst instead of README.md in setup.py b/c the former is in the sdist (#66)
• (BUG) esda 2.1.0 on pypi cannot be installed (#65)

Pull Requests

• ENH: bumping version and handle array creation error in join counts (#95)
• addressing #92 -- .travis.yml issue (#93)
• resolving dev guidelines link (#88)
• ENH - Join count tails (#74)
• DOC: Have notebooks show output in the src (#83)
• officially supported Python versions (#81)
• add docs badge (#79)
• (bug, docs) fix docs building (#78)
• fixed broken development guidelines link, issue #73 (#76)
• added smaup notebook missing data, in addition to sjoin, and groupby code for issue #49 (#75)
• ENH: Contingency tables for Join Counts and related statistics (#71)
• deprecate standardize option (#70)
• REL: 2.1.1 (#69)
• REL: update setup and add Lee statistics (#68)
• correcting typo from (#60) (#67)
• add Lee (2001) local spatial Pearson (#51)
• Use README.rst instead of README.md in setup.py b/c the former is in the sdist (#66)

The following individuals contributed to this release:

• Serge Rey
• Levi John Wolf
• James Gaboardi
• Wei Kang
• Rose.Pearson
• [email protected]

Changes

Version 2.1.1 (2019-07-01)

We closed a total of 41 issues (enhancements and bug fixes) through 18 pull requests, since our last release on 2018-11-03.

Issues Closed

• REL: update setup and add Lee statistics (#68)
• typo caused by vim insert issue (#60)
• correcting typo from (#60) (#67)
• add Lee (2001) local spatial Pearson (#51)
• Use README.rst instead of README.md in setup.py b/c the former is in the sdist (#66)
• (BUG) esda 2.1.0 on pypi cannot be installed (#65)
• DOC: style sheet update and adding Smaup to init (#64)
• DOC: correcting Geary documentation (#63)
• 2.1.0 (#62)
• (ENH) FDR-based adjustment to account for multiple testing in local statistics (#52)
• [WIP] Contributing Smaup test to esda (#58)
• G_Local: EG_sim and seG_sim are scalar (#53)
• docs building failed (#55)
• (bug) fix docs build (#57)
• BUG: EG_Sim and seG_sim were incorrectly given as scalars. #53 (#54)
• doctests are failing (#35)
• doc: broken link (#43)
• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)

Pull Requests

• REL: update setup and add Lee statistics (#68)
• correcting typo from (#60) (#67)
• add Lee (2001) local spatial Pearson (#51)
• Use README.rst instead of README.md in setup.py b/c the former is in the sdist (#66)
• DOC: style sheet update and adding Smaup to init (#64)
• DOC: correcting Geary documentation (#63)
• 2.1.0 (#62)
• (ENH) FDR-based adjustment to account for multiple testing in local statistics (#52)
• [WIP] Contributing Smaup test to esda (#58)
• (bug) fix docs build (#57)
• BUG: EG_Sim and seG_sim were incorrectly given as scalars. #53 (#54)
• doc: broken link (#43)
• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)

The following individuals contributed to this release:

• Serge Rey
• James Gaboardi
• Filipe Fernandes
• Wei Kang
• Levi John Wolf
• Juan C Duque
• Dani Arribas-Bel

Version 2.1.0 (2019-06-30)

We closed a total of 29 issues (enhancements and bug fixes) through 13 pull requests, since our last release on 2018-11-03.

Issues Closed

• DOC: correcting Geary documentation (#63)
• 2.1.0 (#62)
• (ENH) FDR-based adjustment to account for multiple testing in local statistics (#52)
• [WIP] Contributing Smaup test to esda (#58)
• G_Local: EG_sim and seG_sim are scalar (#53)
• docs building failed (#55)
• (bug) fix docs build (#57)
• BUG: EG_Sim and seG_sim were incorrectly given as scalars. #53 (#54)
• doctests are failing (#35)
• doc: broken link (#43)
• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)

Pull Requests

• DOC: correcting Geary documentation (#63)
• 2.1.0 (#62)
• (ENH) FDR-based adjustment to account for multiple testing in local statistics (#52)
• [WIP] Contributing Smaup test to esda (#58)
• (bug) fix docs build (#57)
• BUG: EG_Sim and seG_sim were incorrectly given as scalars. #53 (#54)
• doc: broken link (#43)
• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)

The following individuals contributed to this release:

• Serge Rey
• Juan C Duque
• Dani Arribas-Bel
• James Gaboardi
• Wei Kang
• Levi John Wolf

This is the second release of esda since the refactoring of PySAL. This is mainly a documentation release.

Version 2.0.1 (2018-11-04)

We closed a total of 15 issues (enhancements and bug fixes) through 7 pull requests, since our last release on 2018-08-25.

Issues Closed

• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)
• docstrings are using pysal legacy (#4)
• add zenodo doi badge (#36)

Pull Requests

• bug: missing bibtex file (#42)
• bug: debugging rtd build (#41)
• enh: updating travis build and rtd (#40)
• BUG: missing rtd file (#39)
• REL: 2.0.1 (#38)
• Prepping for a doc release (#37)
• add zenodo doi badge (#36)

The following individuals contributed to this release:

• Serge Rey
• James Gaboardi

This release is the first tagged release of esda on Github and zenodo.

Full details are reported in CHANGELOG.md.