run-gen-ref hs38 link broken #115
Description
run-gen-ref cannot be used to download hs38/hs38DH as the dowload link is broken:
$ ./run-gen-ref hs38DH
--2017-03-16 10:58:37-- ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz
=> â-â
Resolving ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)... 130.14.250.12, 2607:f220:41e:250::12
Connecting to ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids ...
No such directory âgenomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_idsâ.
gzip: stdin: unexpected end of file
Please run 'bwa index hs38DH.fa'...