✏️ Genome assembly polishing & SNV detection

mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization

📚Bioinformatics Technology Lab common code library

🌳 Human ancestry inference from genomic data

De novo protein-coding potential calculator using a k-mer approach

GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

Linear-time de novo Long Read Assembler

Program for automatically renaming rock core photographs using a custom implemented machine learning & deep learning pipeline.

rAMPage: Rapid AMP Annotation and Gene Estimation

Efficient targeted error resolution and automated finishing of long-read genome assemblies

🧬 Unique (& conserved) DNA sequence identification

Extensive de-novo TE Annotator

Conda recipes for the bioconda channel.

interactive visualization of single-cell transcriptomes

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Use cDNA alignments with or without genetic map information to evaluate the completeness and correctness of a de novo genome or transcriptome assembly.