A modest re-desing update for the classic FastQC report.

Experimental recipes for R packages

ssh + reverse sshfs + port forwarder, in Docker-like CLI (predecessor of Lima)

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

Jupyter kernel for the R programming language

Didactic material for learning bioinfo

A fresh approach to string manipulation in R

An implementation of chunked, compressed, N-dimensional arrays for Python.

Rust bindings for the Python interpreter

An R 📦 to make testing 😀

A lightweight and high-performance reverse proxy for NAT traversal, written in Rust. An alternative to frp and ngrok.

Yet Another Dotfiles Manager

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

General-purpose programming language and toolchain for maintaining robust, optimal, and reusable software.

Reading, writing, and processing images in a wide variety of file formats, using a format-agnostic API, aimed at VFX applications.

A Markdown Linter and Formatter written in Rust

Collection of useful (to me) python scripts for interacting with napari

Intro to napari Workshop

@luciorq's repository for 'mygeopy' project

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

A template repository for Python projects

Python packaging class material for August 2025 school in Fairbanks.

Python testing class material for August 2025 school in Fairbanks.

Demo Repository for URSSI Summer School

R methods for generating truncated transcript annotations