
@online{andrews12_fastqc,
  title = {{{FastQC A Quality Control}} Tool for {{High Throughput Sequence Data}}},
  url = {http://www.bioinformatics.babraham.ac.uk/projects/fastqc/},
  author = {Andrews, S},
  urldate = {2013-10-22},
  date = {2012},
  groups = {Hons}
}

@software{joshi11_sickle,
  title = {Sickle: {{A}} Sliding-Window, Adaptive, Quality-Based Trimming Tool for {{FastQ}} Files},
  url = {https://github.com/najoshi/sickle.},
  version = {1.33},
  author = {Joshi, N A and Fass, J N},
  date = {2011}
}

@article{lindgreen12_adapterremoval,
  title = {{{AdapterRemoval}}: Easy Cleaning of next-Generation Sequencing Reads},
  volume = {5},
  issn = {1756-0500},
  url = {http://dx.doi.org/10.1186/1756-0500-5-337},
  doi = {10.1186/1756-0500-5-337},
  shorttitle = {{{AdapterRemoval}}},
  journaltitle = {BMC Research Notes},
  shortjournal = {BMC Research Notes},
  author = {Lindgreen, Stinus},
  urldate = {2017-02-12},
  date = {2012},
  pages = {337}
}

@article{doring08_seqan,
  title = {{{SeqAn An}} Efficient, Generic {{C}}++ Library for Sequence Analysis},
  volume = {9},
  issn = {1471-2105},
  url = {http://dx.doi.org/10.1186/1471-2105-9-11},
  doi = {10.1186/1471-2105-9-11},
  journaltitle = {BMC Bioinformatics},
  shortjournal = {BMC Bioinformatics},
  author = {Döring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut},
  urldate = {2017-03-09},
  date = {2008},
  pages = {11},
  groups = {2017-qcpp,2017-qcpp}
}


