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An R package for making stochastic character maps of continuous trait data on phylogenies

R 1 Updated Aug 12, 2025

Zotero Better Bibtex citations for VS Code

TypeScript 96 13 Updated Mar 21, 2024

Keeping alive the amazing examples from Tyler Vigen

HTML 8 Updated May 17, 2025

Renders a Multilingual Quarto Project (Book or Website)

R 52 10 Updated Oct 21, 2025

R Interface to the Better BiBTex Zotero Connector

R 149 28 Updated Nov 12, 2024

R Package for Validation of Arguments and Generation of Readable Error Messages

R 8 2 Updated Jun 30, 2024

paint the data

R 144 7 Updated Dec 2, 2023

PHYLOgenomic analysis pipeline for HERBarium specimens

Python 17 6 Updated May 7, 2025

Night theme for Zotero UI and PDF

SCSS 2,468 39 Updated Sep 8, 2025

CladeDate: Empirical calibration density generator for divergence time estimation

R 10 1 Updated Jul 23, 2025

ORTHOSKIM allows in silico capture of targeted sequences in genomic or transcriptomic libraries.

Python 8 5 Updated Apr 7, 2025

Genotype Calling with Uncertainty from Sequencing Data in Polyploids πŸŒπŸ“πŸ₯”πŸ πŸ₯

HTML 30 10 Updated Mar 8, 2025

A lightning-fast taxonomic database store backed by LMDB

R 5 1 Updated Sep 13, 2021

Identify rogue taxa in phylogenetic trees within R

Bluespec 3 Updated Sep 8, 2025

GNdiff compares scientific names from two files

Go 7 1 Updated Nov 6, 2023

A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))

1 Updated Feb 16, 2021

Wrap R vectors in markdown syntax

R 114 1 Updated Mar 11, 2024

Workflow to detect and phase hybrids in target capture data

R 20 6 Updated Mar 9, 2023

tidy processing of biological sequences in R

C++ 44 4 Updated Jan 8, 2025

Plotly plots of rectangular and circular layout phylograms and cladograms

Jupyter Notebook 7 1 Updated Oct 1, 2018

Reproducibility Tools For Distill Sites

R 6 2 Updated Oct 1, 2021

A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.

Python 43 10 Updated Apr 25, 2024

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,478 174 Updated Oct 30, 2025

Generate utils::globalVariables() from roxygen tags

R 52 Updated Aug 22, 2023

userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.

CSS 27 6 Updated Nov 13, 2020

Distributed Representations of Words using word2vec

C++ 71 4 Updated Aug 2, 2024

Querying database aggregators and citing primary sources of resulting occurrence records.

HTML 23 6 Updated Sep 29, 2025

Htmlwidget renderer for Vega and Vega-Lite

R 69 12 Updated Jan 13, 2024

Easily integrate 'grid' drawing with 'ggplot2'

R 34 3 Updated Mar 18, 2022
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