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Commits on Jan 6, 2025

• Forgot to update conditional-comments.hiv1.csv/json

  philiptzou

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• Release algV9.8

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Commits on Nov 10, 2024

• Update pattern changes

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  43956bd

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• Release algV9.7

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Commits on Sep 21, 2024

• Address an issue that missing DRPs where not reported by NGS program

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Commits on Jul 21, 2024

• Remove non-used publishing and bintray since it's causing problems

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Commits on Mar 10, 2024

• Update ANRS to version 34

  philiptzou

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  54351b7

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• Update patterns

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  17bd372

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• Release HIVDB 9.6

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  c0e6d11

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• Add back -w window size setting

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Commits on Feb 25, 2024

• Update patterns and add a missed mutation

  philiptzou

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• Pre-release algV9.6a1

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Commits on Feb 19, 2024

• Reduce k-mer size for increasing alignment sensitivity

  philiptzou

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Commits on Feb 17, 2024

• Add patterns scores

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  e15ab68

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Commits on Jan 21, 2024

• Fix incorrect region of X29

  philiptzou

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Commits on Jan 15, 2024

• Add year to two reference sequences

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  4b575e8

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Commits on Jan 13, 2024

• Fix 219-

  philiptzou

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  34db45d

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• Release HIVDB-HIV2 9.0

  philiptzou

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  0f4f8f4

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• New HIV2 comments

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Commits on Dec 9, 2023

• Divide subtype A to A1/3/4/6/7; add A8; correct 6 refs to X22

  philiptzou

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Commits on Nov 5, 2023

• Release algV9.5.1 to fix comment mistakes

  philiptzou

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Commits on Oct 22, 2023

• Fix overlapped comments and mutation types

  philiptzou

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Commits on Sep 22, 2023

• Update mutation-type-pairs

  philiptzou

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Commits on Aug 23, 2023

• Release algorithm 9.5.0

  philiptzou

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Commits on Jul 21, 2023

• Bump pygments from 2.4.2 to 2.15.0 in /hivfacts-python

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  dependabot[bot]

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  philiptzou

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Commits on Jun 26, 2023

• Fix auto-symlink of HIVDB_latest.xml

  philiptzou

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Commits on Jun 11, 2023

• Release HIVDB_9.4.1 (fixed a comment)

  philiptzou

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Commits on Apr 26, 2023

• Update HIVDefaultSequenceValidator to report PostAlign messages

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Commits on Apr 13, 2023

• Add HIVDB older version 6.x back

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Commits on Dec 14, 2022

• Remove sequence shrinkage validation: no longer available

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Commits on Dec 8, 2022

• Release HIVDB 9.4; CAI comments

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Commits on Nov 28, 2022

• Add symlink to latest HIVDB algorithm

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Commits on Nov 21, 2022

• Release 2022.11 (AlgV9.3)

  philiptzou

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Commits on Oct 27, 2022

• Improve minimap2 alignment for sequences containing N+ segments

  philiptzou

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Commits on Oct 26, 2022

• Fix a bug in HIVDB 9.2 algo

  philiptzou

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