.. _dagman-workflows:

DAGMan Introduction
===================

:index:`DAGMan`
:index:`Directed Acyclic Graph (DAG)`
:index:`Directed Acyclic Graph Manager (DAGMan)`
:index:`dependencies within<single: dependencies within; job>`


:index:`DAG description file<single: DAGMan; DAG description file>`

Describing Workflows with DAGMan
--------------------------------

A DAGMan workflow is described in a **DAG description file**. The input file specifies
the nodes of the DAG as well as the dependencies that order the DAG.

A **node** within a DAG represents a unit of work. It contains the following:

-   **List of Jobs**: A collection of one or more HTCondor jobs, defined
    in a single submit description.
-   **PRE Script** (optional): A script that runs before the list of jobs is submitted.
    Typically used to verify that all inputs are valid.
-   **POST Script** (optional): A script that runs after the list of jobs finishes.
    Typically used to verify outputs and clean up temporary files.

The following diagram illustrates the elements of a node -- every
node must contain a list of jobs, with an optional pre and an optional
post script.

.. mermaid::
   :align: center

   flowchart LR
    Start((Start)) --> JOBS
    Start --> PRE[Pre-Script]
    subgraph DAG Node
    PRE --> JOBS[List of Jobs]
    JOBS --> POST[Post-Script]
    end
    JOBS --> End((End))
    POST --> End((End))

An **edge** in DAGMan describes a dependency between two nodes. DAG edges are
directional; each has a **parent** and a **child**, where the parent node must
finish running before the child starts. Any node can have an unlimited number
of parents and children.


Example: Diamond DAG
''''''''''''''''''''

.. sidebar:: Diamond DAG

    .. mermaid::
        :align: center

        flowchart TD
         A --> B & C
         B & C --> D

A simple diamond-shaped DAG, as shown on the right, will be used in examples. This
four node DAG would be described as the following in the DAG description file:

.. code-block:: condor-dagman
    :caption: Example Diamond DAG description file

    # File name: diamond.dag

    JOB A A.sub
    JOB B B.sub
    JOB C C.sub
    JOB D D.sub
    PARENT A CHILD B C
    PARENT B C CHILD D

.. _DAGMan JOB:

JOB
---

The :dag-cmd:`JOB[Usage]` command specifies a list of one or more HTCondor jobs that
become the core of a node in the DAG. The syntax used for each :dag-cmd:`JOB`
command is:

.. code-block:: condor-dagman

    JOB NodeName SubmitDescription [DIR directory] [NOOP] [DONE]

A :dag-cmd:`JOB` entry maps a *NodeName* to an HTCondor submit description.
The *NodeName* uniquely identifies nodes within the DAG description file and in
output messages. Each node name, given by *NodeName*, within the DAG must
be unique.

The values defined for *NodeName* and *SubmitDescription* are case
sensitive, as file names in a file system are case sensitive. The
*NodeName* can be any string that contains no white space, except for the
words *PARENT* and *CHILD* (in upper, lower, or mixed case). *NodeName*
also cannot contain special characters (``.`` & ``+``) which are reserved
for system use.

The optional *DIR* keyword specifies a working directory for this node,
from which the HTCondor jobs will be submitted, and from which a *PRE*
and/or *POST* script will be run. If a relative directory is specified,
it is relative to the current working directory as the DAG is submitted.

.. note::

    DAG containing *DIR* specifications cannot be run in conjunction with
    the *-usedagdir* command-line argument to :tool:`condor_submit_dag`.

The optional *NOOP* keyword identifies a no-operation node. Meaning the
list of jobs will not be submitted to HTCondor. DAGMan will still execute
any PRE and/or POST scripts associated with the node. Marking a node
with *NOOP* is useful for debugging complex DAG structures without
changing the flow of the DAG.

The optional *DONE* keyword identifies a node as being already
completed. Meaning neither the list of jobs nor scripts will be
executed. This is mainly used by Rescue DAGs generated by DAGMan
itself, in the event of a failure to complete the workflow.

.. _DAG node dependencies:

PARENT/CHILD Relationships
--------------------------

:index:`describing dependencies<single: DAGMan; Describing dependencies>`
The :dag-cmd:`PARENT/CHILD[Usage]` command specifies the dependencies within the DAG.
Nodes are parents and/or children of other nodes within the DAG. A parent node must
be completed successfully before any of its children may be started. A child node may
only be started once all its parents have successfully completed.

The syntax used for each dependency (:dag-cmd:`PARENT/CHILD`) command is

.. code-block:: condor-dagman

    PARENT ParentNodeName [ParentNodeName2 ... ] CHILD ChildNodeName [ChildNodeName2 ... ]

.. sidebar:: Creating Multiple Dependencies for Nodes

    Multiple node dependencies can easily be made in a single line
    as shown below:

    .. code-block:: condor-dagman
        :caption: Example DAG description declaring multiple node dependencies

        PARENT p1 p2 CHILD c1 c2

    .. mermaid::
        :align: center

        flowchart TD
         p1 & p2 --> c1 & c2

The *PARENT* keyword is followed by one or more *ParentNodeName(s)*. The
*CHILD* keyword is followed by one or more *ChildNodeName(s)*. Each child
node depends on every parent node within the line. A single line in the
input file can specify the dependencies from one or more parents to one
or more children. The diamond-shaped DAG example may specify the
dependencies with

.. code-block:: condor-dagman
    :caption: Example Diamond DAG description for node dependencies

    PARENT A CHILD B C
    PARENT B C CHILD D

An alternative specification for the diamond-shaped DAG may specify some
or all of the dependencies on separate lines:

.. code-block:: condor-dagman
    :caption: Alternate example Diamond DAG description for node dependencies

    PARENT A CHILD B C
    PARENT B CHILD D
    PARENT C CHILD D

.. sidebar:: Script Execution Times Based on Type

    - PRE : Executes before the node's associated jobs are submitted
    - POST : Executes once all of the node's associated jobs exit the
      *condor_schedd* queue.
    - HOLD : Executes when any job associated with the node goes into
      the held state.

.. _DAG Node Scripts:

Scripts
-------

The optional :dag-cmd:`SCRIPT[Usage]` command specifies processing to be done relative
to the execution the node's associated jobs depending on the script type. All scripts
run on the Access Point and not the Execution Points where the actual jobs are
likely to run.

:index:`Node scripts<single: DAGMan; Node scripts>`

Script Types
''''''''''''

:index:`PRE script<single: DAGMan; PRE script>`
:index:`POST script<single: DAGMan; POST script>`
:index:`HOLD script<single: DAGMan; HOLD script>`
Processing done before the list of jobs is submitted is called a *PRE* script. Processing
done after the list of jobs completes execution is called a *POST* script. The *PRE*
and *POST* script are considered part of the DAG node structure. Additionally,
there is a *HOLD* script that runs when any job associated with the node goes into
the held state which are not considered part of the DAG workflow and are run on a
best-effort basis. If one does not complete successfully, it has no effect on the
overall workflow and no error will be reported.

.. note::

    The script executable does not have to be a shell script (Unix) or batch file
    (Windows); but should be light weight since it runs directly on the AP.

The syntax used for *SCRIPT* commands is

.. code-block:: condor-dagman

    # PRE-Script
    SCRIPT [DEFER status time] [DEBUG filename type] PRE <NodeName | ALL_NODES> ExecutableName [arguments]
    # POST-Script
    SCRIPT [DEFER status time] [DEBUG filename type] POST <NodeName | ALL_NODES> ExecutableName [arguments]
    # HOLD-Script
    SCRIPT [DEFER status time] [DEBUG filename type] HOLD <NodeName | ALL_NODES> ExecutableName [arguments]

The *NodeName* identifies the node to which the script is attached. The *ExecutableName*
specifies the executable (e.g., shell script or batch file) to be executed and may not
contain spaces. The optional *arguments* are command line arguments to the script,
including delimiting spaces. Both *ExecutableName* and optional *arguments* are case sensitive.

Scripts are commonly used to do simple tasks such as the following:

- PRE: Verify inputs for a node's jobs that are produced by a parent node.
- POST: Turn a execution failure of the list of jobs into a successful node
  completion so the DAG doesn't fail given specific exit codes.
- HOLD: Notify the user of a held job via email.

DEFER retries
'''''''''''''

The optional *DEFER* keyword causes a retry of only the script if the
execution of the script exits with the exit code given by *status*. The
retry occurs after at least *time* seconds, rather than being considered
failed. While waiting for the retry, the script does not count against a
*maxpre* or *maxpost* limit.

.. note::

    The ordering of the *DEFER* keyword within the :dag-cmd:`SCRIPT` specification is
    fixed. It must come directly after the :dag-cmd:`SCRIPT` keyword; this is done to
    avoid backward compatibility issues for any DAG with a *NodeName* of DEFER.

.. _Script Debugging:

DEBUG file
''''''''''

The optional *DEBUG* keyword will capture a scripts specified standard
output streams (**STDOUT** and/or **STDERR**) and write them to a specified
debug file. This keyword is followed by two pieces of information:

  #. *Filename*: File to write captured output into.
  #. *Type*: Type of output to capture. Takes one the following options:
      #. **STDOUT**
      #. **STDERR**
      #. **ALL** (Both STDOUT & STDERR)

This keyword is fixed to appear prior to the script type (PRE, POST, HOLD)
and after any declared *DEFER* retries.

.. note::

    DAGMan will create the specified debug file if it does not already
    exist. Otherwise, the debug file is appended to.

.. note::

    It is safe to have multiple scripts write to the same file as
    DAGMan captures all of the scripts output and writes everything
    at one time. This write also includes a dividing banner with
    useful information regarding that scripts execution.

Scripts as part of a DAG workflow
'''''''''''''''''''''''''''''''''

Scripts are executed on the access point; the access point is not
necessarily the same machine upon which the node's jobs are run. Further,
a single cluster of HTCondor jobs may be spread across several machines.

If the PRE script fails, then the HTCondor jobs associated with the node
are not submitted, and the POST script is not run either (by default). However,
if the list of jobs is submitted, and there is a POST script, the POST script is always
run once the list of jobs finishes. The behavior when the PRE script fails may be
changed to run the POST script by setting configuration variable
:macro:`DAGMAN_ALWAYS_RUN_POST` to ``True`` or by passing the **-AlwaysRunPost**
argument to :tool:`condor_submit_dag`.

Examples that use PRE or POST scripts
'''''''''''''''''''''''''''''''''''''

Examples using the diamond-shaped DAG. The first example uses a PRE script
to expand a compressed file needed as input for the associated HTCondor jobs
of nodes B and C. The DAG description file:

.. code-block:: condor-dagman
    :caption: Example Diamond DAG description using PRE Scripts

    # File name: diamond.dag

    JOB  A  A.sub
    JOB  B  B.sub
    JOB  C  C.sub
    JOB  D  D.sub
    SCRIPT PRE  B  pre.sh $NODE .gz
    SCRIPT PRE  C  pre.sh $NODE .gz
    PARENT A CHILD B C
    PARENT B C CHILD D

The script ``pre.sh`` uses its command line arguments to form the file
name of the compressed file. The script contains

.. code-block:: bash

    #!/bin/sh
    gunzip ${1}${2}

Therefore, the PRE script invokes

.. code-block:: bash

    gunzip B.gz

for node B, which uncompresses file ``B.gz``, placing the result in file ``B``.

This second example uses the ``$RETURN`` macro. The DAG description file contains
the POST script specification:

.. code-block:: condor-dagman

    SCRIPT POST A stage-out job_status $RETURN

If the first non-successful HTCondor job of node A exits with the value -1,
the POST script is invoked as

.. code-block:: console

    $ stage-out job_status -1

.. warning::

    DAGMan script macros must be declared individually with surrounding spaces
    to be replaced. Providing a script argument such as ``job_status=$RETURN``
    will not substitute the ``$RETURN`` macro and pass along the entire string.

.. _DAG Script Macros:

Special Script Argument Macros
''''''''''''''''''''''''''''''

DAGMan provides the following macros to be used for node script arguments.
The use of these macros are limited to being used as individual command line
arguments surrounded by spaces:

+---------------+---------------+-------------------+--------------------+
|               | $NODE         | $NODE_COUNT       | $QUEUED_COUNT      |
|               +---------------+-------------------+--------------------+
|               | $DONE_COUNT   | $FAILED_COUNT     | $FUTILE_COUNT      |
|  All Scripts  +---------------+-------------------+--------------------+
|               | $DAGID        | $DAG_STATUS       |                    |
|               +---------------+-------------------+--------------------+
|               | $RETRY        | $MAX_RETRIES      |                    |
+---------------+---------------+-------------------+--------------------+
|               | $JOBID        | $CLUSTERID        | $JOB_COUNT         |
|               +---------------+-------------------+--------------------+
|  POST Scripts | $RETURN       | $EXIT_CODES       | $EXIT_CODE_COUNTS  |
|               +---------------+-------------------+--------------------+
|               | $SUCCESS      | $JOB_ABORT_COUNT  | $PRE_SCRIPT_RETURN |
+---------------+---------------+-------------------+--------------------+


:index:`Defined special node macros<single: DAGMan; Defined special node macros>`

The special macros for all scripts:

-  ``$NODE`` evaluates to the (case sensitive) string defined for *NodeName*.
-  ``$RETRY`` evaluates to an integer value set to 0 the first time a node
   is run, and is incremented each time the node is retried. See :ref:`DAG node success`
   for the description of how to cause nodes to be retried.
-  ``$MAX_RETRIES`` evaluates to an integer value set to the maximum
   number of retries for the node. Defaults to 0 if retries aren't
   specified for a node.
-  ``$DAGID`` is the node's associated :ad-attr:`DAGManJobId`.
-  ``$DAG_STATUS`` is the status of the DAG that is recorded in the DAGMan
   scheduler universe job's ClassAd as :ad-attr:`DAG_Status`.

   .. note::

       The macro ``$DAG_STATUS`` value and definition is unrelated to the attribute named
       ``DagStatus`` as defined in the node status file.

-  ``$NODE_COUNT`` is the total number of nodes within the DAG (including
   the :dag-cmd:`FINAL` node).
-  ``$QUEUED_COUNT`` is the current number of nodes running jobs in the DAG.
-  ``$DONE_COUNT`` is the current number of nodes that have completed successfully in the DAG.
-  ``$FAILED_COUNT`` is the current number of nodes that have failed in the DAG.
-  ``$FUTILE_COUNT`` is the current number of nodes that will never run in the DAG.

Macros for POST Scripts only:

-  ``$CLUSTERID`` is the node's associated list of jobs :ad-attr:`ClusterId`.
-  ``$JOBID`` evaluates to a representation of the HTCondor job ID [ClusterId.ProcId]
   of the node job. For nodes with multiple jobs in the same cluster, the
   :ad-attr:`ProcId` value is the one of the last job within the cluster.
-  ``$JOB_COUNT`` evaluates to the total number of jobs associated with the node.
-  ``$JOB_ABORT_COUNT`` is the number of jobs associated with the node that
   exited the queue with an abort event.
-  ``$SUCCESS`` evaluates to ``True`` or ``False`` representing whether the node
   has been successful up to this point (PRE script and list of jobs succeeded).
-  ``$RETURN`` variable evaluates to the return value of the HTCondor job
   if there is a single job within a cluster. With multiple jobs within the
   same cluster, the value will be 0 if all jobs within the cluster are
   successful. Otherwise, the value is the exit value of the first job in
   the cluster to write a terminate event.

   - A job that dies due to a signal is reported with a ``$RETURN`` value
     representing the additive inverse of the signal number. For example,
     SIGKILL (signal 9) is reported as -9.
   - A job whose batch system submission fails is reported as -1001.
   - A job that is externally removed from the batch system queue (by something
     other than :tool:`condor_dagman`) is reported as -1002.
   - If the node's jobs were skipped because of failure of the PRE script,
     the value of ``$RETURN`` will be -1004.
-  ``$EXIT_CODES`` is an ordered comma separated list of :ad-attr:`ExitCode`\ s returned
   by the jobs associated with the node.
-  ``$EXIT_CODE_COUNTS`` is a ordered comma separated list of the number of jobs associated
   with the node that exited with a particular :ad-attr:`ExitCode`. The information
   is passed as ``{ExitCode}:{Count}``.
-  ``$PRE_SCRIPT_RETURN`` variable evaluates to the return value of the
   PRE script of a node, if there is one. If there is no PRE script, this
   value will be -1.

.. sidebar:: Example Diamond DAG Using Inline Descriptions

    .. code-block:: condor-dagman
        :caption: Example Diamond DAG description using inline submit descriptions

        # File name: diamond.dag

        # Job A using personal inline
        # submit description
        JOB A {
            executable   = /path/diamond.exe
            output       = diamond.out.$(cluster)
            error        = diamond.err.$(cluster)
            log          = diamond_condor.log
        }

        JOB B B.sub
        JOB C C.sub
        JOB D D.sub

        PARENT A CHILD B C
        PARENT B C CHILD D

    .. code-block:: condor-dagman
        :caption: Example Diamond DAG using inline SUBMIT-DESCRIPTION command

        # File name: diamond.dag

        # Shared submit description
        SUBMIT-DESCRIPTION DiamondDesc {
            executable   = /path/diamond.exe
            output       = diamond.out.$(cluster)
            error        = diamond.err.$(cluster)
            log          = diamond_condor.log

            request_cpus   = 1
            request_memory = 1024M
            request_disk   = 10240K
        }

        JOB A DiamondDesc
        JOB B DiamondDesc
        JOB C DiamondDesc
        JOB D DiamondDesc

        PARENT A CHILD B C
        PARENT B C CHILD D

Node Submit Descriptions
------------------------

Inline Submit Descriptions
''''''''''''''''''''''''''

Instead of using a submit description file, you can alternatively include an
inline submit description directly inside the ``.dag`` file. An inline submit
description should be wrapped in ``{`` and ``}`` braces, with each argument
appearing on a separate line, just like the contents of a regular submit file.

This can be helpful when trying to manage lots of submit descriptions, so they
can all be described in the same file instead of between many files.

.. _DAG submit description cmd:

SUBMIT-DESCRIPTION command
''''''''''''''''''''''''''

In addition to declaring inline submit descriptions as part of a node, they
can be declared independently of nodes using the :dag-cmd:`SUBMIT-DESCRIPTION[Usage]` command.
This can be helpful to reduce the size and improve the readability of a ``.dag`` file when
many nodes share the same submit description.

A :dag-cmd:`SUBMIT-DESCRIPTION` can be defined using the following syntax:

.. code-block:: condor-dagman

    SUBMIT-DESCRIPTION DescriptionName {
        # submit attributes go here
    }

An independently declared submit description must have a unique name that is
not used by any of the nodes. It can then be linked to a node as follows:

.. code-block:: condor-dagman

    JOB NodeName DescriptionName

.. note::

    Both :dag-cmd:`SUBMIT-DESCRIPTION` and node inline submit description can use ``@=<tag>``
    to specify a custom end tag, instead of using braces (``{}``), which can then be referenced
    as ``@<tag>``.

    .. code-block:: condor-dagman

        SUBMIT-DESCRIPTION SharedDescription @=DescEnd
            # Inline submit description
        @DescEnd

.. sidebar:: Example Diamond DAG Using External Submit File

    .. code-block:: condor-submit
        :caption: Example external job submit description

        # File name: diamond_job.sub

        executable   = /path/diamond.exe
        output       = diamond.out.$(cluster)
        error        = diamond.err.$(cluster)
        log          = diamond_condor.log
        request_cpus   = 1
        request_memory = 1024M
        request_disk   = 10240K

        queue

    .. code-block:: condor-dagman
        :caption: Example Diamond DAG using external job submit description

        # File name: diamond.dag

        JOB  A  diamond_job.sub
        JOB  B  diamond_job.sub
        JOB  C  diamond_job.sub
        JOB  D  diamond_job.sub
        PARENT A CHILD B C
        PARENT B C CHILD D

:index:`node job submit description file<single: DAGMan; Node job submit description file>`

External File Descriptions
''''''''''''''''''''''''''

Each node in a DAG may use a submit description file like one that a user may
used to submit via :tool:`condor_submit`.

.. code-block:: console

    $ condor_submit submit_file.sub

A key limitation is that each HTCondor submit description file must submit
jobs described by a submit description containing a single :subcom:`queue`
statement. Multiple :subcom:`queue` statements are not permitted.

DAGMan does allow the submission of one or more jobs when submitting a node's
submit description described in an external file. However, it is recommended that a
node only contains a single job to a cluster because DAGMan treats the
an entire list of jobs associated with a single node as one entity. Meaning,
one job failure will result in the entire list of jobs being considered failed.
Once declared as failed, the remaining jobs associated with the node will be
removed from the queue.

Since each node uses the same HTCondor submit description file, this implies
that each node within the DAG runs the same list of jobs, but the ``$(Cluster)``
macro produces unique file names for each of the node's outputs because each node
has it's own cluster of jobs.

DAGMan Specific Information Macros
''''''''''''''''''''''''''''''''''

When submitting jobs on behalf of the user, DAGMan will create custom
submit description macros that can be utilized. The following macros are
referable by the job submit description:

- **JOB**: The node name of which these jobs belong.
- **RETRY**: The current retry attempt number. First execution is 0.
- **DAGManJobId**: The jobs associtated :ad-attr:`DAGManJobId`.
- **DAG_STATUS**: The current DAG status as described by :ad-attr:`DAG_Status`
  (Intended for Final Node)
- **FAILED_COUNT**: The current number of failed nodes in the DAG
  (Intended for Final node).
- **DAG_PARENT_NAMES**: Comma separated list of node names that are parents
  of the node these jobs belong.

DAGMan will also add the following information to the jobs ClassAd:

- :ad-attr:`DAGManJobId`: Job-Id of the DAGMan job that submitted these jobs.
- :ad-attr:`DAGNodeName`: The node name of which these jobs belong.
- :ad-attr:`DAGManNodeRetry`: The nodes current retry number. First execution is 0.
  This is only included if :macro:`DAGMAN_NODE_RECORD_INFO` includes ``Retry``.
- :ad-attr:`DAGParentNodeNames`: List of parent node names.
- :ad-attr:`DAG_Status`: Current DAG status (Intended for Final Node).

.. note::

    Depending on the number of parents nodes a node has, the attribute
    :ad-attr:`DAGParentNodeNames` and submit macro **DAG_PARENT_NAMES**
    may not be set.
