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Commits on Nov 1, 2025

• Update manuscript link in README

  johahi

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Commits on Aug 8, 2025

• Update data_loading_example.ipynb to use import_fragments

  lauradmartens

  authored
  8542ffe

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Commits on Jul 30, 2025

• fixed the sequence window definition

  

  marie-minaeva

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  lauradmartens

  committed
  4c16d20

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• enabled max_read_length in the dataloders

  

  marie-minaeva

  authored and

  lauradmartens

  committed
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• Added variable read length for other techologies

  

  marie-minaeva

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  lauradmartens

  committed
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Commits on Jul 16, 2025

• Update Evaluate_Model.ipynb

  lauradmartens

  authored
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Commits on Jul 14, 2025

• Update train_rna_only.py

  lauradmartens

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Commits on May 26, 2025

• Update README.rst

  lauradmartens

  authored
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• Add rasterization

  

  lauradmartens

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  johahi

  committed
  81e5f89

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• Add default neighbors

  

  lauradmartens

  authored and

  johahi

  committed
  2e0813d

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• Remove unused dataloaders

  

  lauradmartens

  authored and

  johahi

  committed
  1e0fef8

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Commits on Mar 17, 2025

• Add code to generate per sample

  lauradmartens

  committed
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Commits on Mar 13, 2025

• Update train_config.yaml

  lauradmartens

  authored
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Commits on Jan 10, 2025

• Update setup.py

  johahi

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Commits on Dec 6, 2024

• Gene ID usage

  lauradmartens

  committed
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Commits on Dec 5, 2024

• pseudobulk count pred no longer OOMs for many cells

  johahi

  committed
  a2fd92b

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Commits on Nov 30, 2024

• Update train_rna_only.py

  lauradmartens

  authored
  9d9f1c1

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• Merge pull request #7 from gagneurlab/evaluate-function

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  lauradmartens

  authored
  90e7e3f

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• Implement logging for rna only

  lauradmartens

  committed
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Commits on Nov 25, 2024

• Adapt eval function

  lauradmartens

  committed
  2cdf01f

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• Update gitignore

  lauradmartens

  committed
  8b3a3fb

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Commits on Nov 21, 2024

• Add data saving

  lauradmartens

  committed
  5b1c7d3

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• Update scripts

  lauradmartens

  committed
  ca0a499

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• Update utils.py

  lauradmartens

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• Add embedding to example

  lauradmartens

  committed
  5ebb154

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• Fix heading

  lauradmartens

  committed
  5e3f8a3

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Commits on Nov 18, 2024

• Fix merge conflicts

  lauradmartens

  committed
  19dbad5

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• Update to new snapatac

  lauradmartens

  committed
  45633eb

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• Update readme_link.rst

  lauradmartens

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  88ef682

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• Update installation.rst

  lauradmartens

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• Update README.rst

  lauradmartens

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• Update README.rst

  lauradmartens

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Commits on Nov 8, 2024

• Update README.rst

  lauradmartens

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Commits on Nov 4, 2024

• small code example how to load model using huggingface libraries

  johahi

  committed
  b9a6fa1

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• Update ylim

  lauradmartens

  authored
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