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Commits on May 4, 2018

• scaffold tree now converted to binary via pyinstaller

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Commits on Apr 30, 2018

• refactor to remove global variables at some point

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  galicae

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Commits on Apr 26, 2018

• DE genes function fix

  gonzaparra

  committed
  e0b934f

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• DE genes function implemented

  gonzaparra

  committed
  fddd360

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• amended change to only affect termination condition

  galicae

  committed
  1d9386a

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• fixed small bug in ScaffoldTree.py

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  galicae

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Commits on Apr 5, 2018

• fixed bud at gene embedding function

  gonzaparra

  committed
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• fixed bud at gene embedding function

  gonzaparra

  committed
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Commits on Mar 20, 2018

• mu and lambda exploration finished

  gonzaparra

  committed
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Commits on Feb 8, 2018

• changed scaffolding of the EPT

  gonzaparra

  committed
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• changed scaffolding of the EPT

  gonzaparra

  committed
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Commits on Feb 5, 2018

• cleaning

  gonzaparra

  committed
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• cleaning

  gonzaparra

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Commits on Jan 31, 2018

• cleaning

  gonzaparra

  committed
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Commits on Jan 25, 2018

• fixed bug in heatmaps plot function

  gonzaparra

  committed
  2b7344d

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• fixed print numbers in ScaffoldTree.py, now the numbers that are printed in the output are the same as the ones after adding +1 because of python indexes starting at 0

  gonzaparra

  committed
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Commits on Jan 24, 2018

• fixed bug in embedding

  gonzaparra

  committed
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Commits on Dec 4, 2017

• added Guo Features

  gonzaparra

  committed
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• Merge branch 'master' of github.com:soedinglab/merlot

  gonzaparra

  committed
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• changes

  gonzaparra

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Commits on Nov 28, 2017

• Update ExampleGuo2010.R

  gonzaparra

  authored
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• fixed heatmaps function

  gonzaparra

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• deleted extra lines

  gonzaparra

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Commits on Nov 24, 2017

• added Paul mapping

  gonzaparra

  committed
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Commits on Nov 23, 2017

• added rotated coordinates file

  gonzaparra

  committed
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Commits on Nov 16, 2017

• added Cells2Branches to ScaffoldTree

  gonzaparra

  committed
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Commits on Nov 13, 2017

• modified example scripts

  gonzaparra

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Commits on Oct 23, 2017

• added example script

  gonzaparra

  committed
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Commits on Oct 10, 2017

• default mode with sensitive mode

  gonzaparra

  committed
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Commits on Oct 4, 2017

• Guo2D_Example_Finished

  gonzaparra

  committed
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Commits on Sep 29, 2017

• Modified Scaffold Tree python script. Security version is the one before september 28

  gonzaparra

  committed
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Commits on Sep 28, 2017

• Sensitive threshold implemented: Added function calculate_1cell_paths and length_new_branch, plus small changes in the calculate_secondary_endpoints function

  gonzaparra

  committed
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Commits on Sep 26, 2017

• new iterative elastic tree function

  gonzaparra

  committed
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Commits on Sep 21, 2017

• Fixed Scaffold calculation: Negative scoring endpoints are now disregarded even when using the NBranches option

  gonzaparra

  committed
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Commits on Sep 20, 2017

• added Cells2ScaffoldAssigments object to the scaffold tree

  gonzaparra

  committed
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