refactor(nvim): Update tool descriptions for better loading time (Dav…

…idyz#245)

feat(nvim): Add deduplication option to query tool

docs: Readme updates (Davidyz#233)

* docs(nvim): Add instructions for mason installation

* Auto generate docs

* docs: Update credits and add nix community

* docs(nvim): Clarify lazy-loading behavior for LSP server startup

* Auto generate docs

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Co-authored-by: Davidyz <[email protected]>

feat(cli, nvim): Add `files` subcommand for file manipulation (Davidy…

…z#230)

* feat(cli): add `files` subcommand for file manipulation

* docs(cli): mark `files` subcommand feature as completed

* tests(cli): fix test coverage for existing codebase

* test(cli): test for `files ls`

* tests(cli): add tests for `files rm`

* tests(cli): add tests for `files` subcommand

* feat(cli): make sure `files` commands honor `--project_root`

* docs(cli): document `files` subcommand in cli.md

* Auto generate docs

* feat(cli): remove empty collection after removing files

* tests(cli): fix broken tests due to wrong mocking

* refactor(cli): refactor `files ls` to reuse file listing logic

* feat(cli): add `files` subcommand to the LSP server

* feat(nvim): add `files_ls` tool to CodeCompanion

* fix(cli): improve `files rm` feedback and fix progress handling

* feat(nvim): add `files_rm` tool to CodeCompanion

* docs(cli): document pipe mode of `files ls` subcommand in cli.md

* Auto generate docs

* docs(cli): formatting

* Auto generate docs

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Co-authored-by: Davidyz <[email protected]>

refactor(nvim): disable deduplication for summary mode

Auto generate docs

feat(nvim): Add `allow_summary` option to the query tool

feat(cli, nvim): Use `chunk_id` to deduplicate chunks in codecompanio…

…n tool (Davidyz#183)

* feat(cli): Return `chunk_id` in structured query result output

* Auto generate docs

* feat(nvim): Deduplicate tool results using chunk_id (wip)

* feat(nvim): Deduplicate tool results using in-house result tracker

* fix(nvim): make sure `no_duplicate` option is effective

* refactor(nvim): refactoring and cleanup

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Co-authored-by: Davidyz <[email protected]>

docs: Documentation updates (Davidyz#207)

* feat(docs): Improve documentation and update asciicast

* Auto generate docs

* feat(readme): Update asciicast script in README

* docs: Improve documentation and update asciicast

* Auto generate docs

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Co-authored-by: Davidyz <[email protected]>

feat(cli, nvim): Add `vectorise` subcommand to LSP server (Davidyz#189)

* feat(cli): add `vectorise` subcommand to LSP server

* Auto generate docs

* test(cli): Raise JsonRpcInternalError on invalid action

* test(cli): Raise JsonRpcInternalError on missing collection and improve test coverage

* test(cli): improve test coverage

* feat(cli): Return vectorise command execution results

* fix(nvim): make sure logging works for all kinds of LSP results

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Co-authored-by: Davidyz <[email protected]>