Learning and Aligning Large Protein Families with support of protein language models.

Tiberius is a deep learning gene finder.

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

A minimal ggplot2 theme with an accessible discrete color palette.

A console-based alignment viewer

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

Basic Sequence Taxonomy Annotator

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Another Gtf/Gff Analysis Toolkit

Rich is a Python library for rich text and beautiful formatting in the terminal.

Eukaryotic Genome Annotation Pipeline

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

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A monitor of resources

Vim / Neovim installer and vimrc + plugin manager

A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).

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Rapid & standardized annotation of bacterial genomes & plasmids

Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming

Rapid comparison and dereplication of genomes