List view

Unit test Mutect2 filters

Mutect

tests

Status: Open.

#5763 In broadinstitute/gatk;

· davidbenjamin opened on Mar 6, 2019

M2 should rely less on mapping quality filter

Mutect

Status: Open.

#5069 In broadinstitute/gatk;

· davidbenjamin opened on Jul 30, 2018

Kmerize whole fragments if mates overlap

assembly

HaplotypeCaller

Mutect

Status: Open.

#5068 In broadinstitute/gatk;

· davidbenjamin opened on Jul 29, 2018

Assemble normal reads first in Mutect

assembly

Mutect

QuixoticDream

Status: Open.

#4886 In broadinstitute/gatk;

· davidbenjamin opened on Jun 12, 2018

Call indels in Mutect with just one or two reads

assembly

Mutect

Status: Open.

#4884 In broadinstitute/gatk;

· davidbenjamin opened on Jun 12, 2018

Mutect3 Deep Learning Filter

Epic

Status: Open.

#4815 In broadinstitute/gatk;

· davidbenjamin opened on May 25, 2018

Explore fragment length distribution annotation / filter

Annotations

Mutect

Status: Open.

#4713 In broadinstitute/gatk;

· davidbenjamin opened on Apr 27, 2018

Implement our version of deTiN

Status: Open.

#3088 In broadinstitute/gatk;

· davidbenjamin opened on Jun 12, 2017

Simulate tumors using haploid samples

Mutect

Status: Open.

#2974 In broadinstitute/gatk;

· droazen opened on Jun 5, 2017

Mutect misses some long indels

Status: Open.

#3298 In broadinstitute/gatk;

· davidbenjamin opened on Jul 18, 2017

Band-diagonal Pair-HMM

performance

question

Status: Open.

#3150 In broadinstitute/gatk;

· davidbenjamin opened on Jun 22, 2017