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Commits on Oct 13, 2025

• Merge pull request #273 from biocommons/272-use-latest-uta-version-in-readme

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  reece

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  35b9a56

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Commits on Sep 3, 2025

• docs: use latest uta version in readme

  korikuzma

  authored
  d793dd1

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Commits on Mar 27, 2025

• Merge pull request #269 from biocommons/issue-268-tmp-perm

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  theferrit32

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  ca7c9e8

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• Change container /tmp in example `docker run` to be in a docker volume, not local /tmp, to avoid permission issue in #268

  theferrit32

  committed
  252d128

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Commits on Jan 27, 2025

• update dockerfile for uta_20240523b

  

  Reece Hart

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  a9c2da8

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Commits on Nov 18, 2024

• Merge pull request #261 from invitae/main

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  reece

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  01c13ca

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Commits on Aug 26, 2024

• feat(/IPVC-2695): Updates needed to retain HGNC on transcript (#45)

  bsgiles73

  authored
  684c804

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• Merge pull request #46 from invitae/biocommons-sync-2

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  bsgiles73

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  d33f0d0

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• Merge remote-tracking branch 'upstream/main' into biocommons-sync-2

  bsgiles73

  committed
  6d5e252

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Commits on Jul 10, 2024

• feat(IPVC-2478): updates/fixes to UTA files found during testing (#43)

  bsgiles73

  authored
  2af4ec5

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Commits on Jul 8, 2024

• Update README.md

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  reece

  authored
  53243ea

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Commits on May 23, 2024

• feat(IPVC-2471): add codon_table to txinfo file (#42)

  bsgiles73

  authored
  e8c811c

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Commits on May 22, 2024

• feat(IPVC-2445): add a method to uta.loading to update schema version (#41)

  bsgiles73

  authored
  8b6e4d9

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Commits on May 21, 2024

• feat(IPVC-2464): Add a seqrepo-pull compose service (#40)

  bsgiles73

  authored
  accee56

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Commits on May 15, 2024

• feat(IPVC-2440/IPVC-2442): specify input and output schema names, move one time workflows (#38)

  bsgiles73

  authored
  9e2a927

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• feat(IPVC-2441): various workflow fixes (#39)

  bsgiles73

  authored
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Commits on May 14, 2024

• feat(IPVC-2438): coalesce cdna match alignments (#37)

  bsgiles73

  authored
  59fd1b2

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Commits on May 10, 2024

• feat(IPVC-2435): add chromosome reference accession to unique alignme… (#36)

  bsgiles73

  authored
  2f261e4

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• feat(IPVC-2422): add migration to create materialized view for tx_exon_aln_v (#35)

  bsgiles73

  authored
  3f970c8

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Commits on May 8, 2024

• feat(IPVC-2425): add migration to fix tx-alt-exon-pairs view (#34)

  bsgiles73

  authored
  0c76d42

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• feat(IPVC-2407): check exon structure of exon alignment (#33)

  bsgiles73

  authored
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• feat(IPVC-2386): Backfill transl_excepts (#32)

  bsgiles73

  authored
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Commits on May 5, 2024

• feat(IPVC-2408): Mito processing updates and bug fixes (#31)

  bsgiles73

  authored
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Commits on May 3, 2024

• feat(IPVC-2195): add script to generate alignment metrics (#30)

  bsgiles73

  authored
  875e428

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Commits on Apr 29, 2024

• feat(IPVC-2390): translation exceptions (#28)

  nvta1209

  authored
  c007662

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Commits on Apr 26, 2024

• fix(IPVC-2399): fix gene id back fill migration script, update paths … (#29)

  bsgiles73

  authored
  b915f31

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Commits on Apr 25, 2024

• IPVC-2344: Update SeqRepo load to discover local fasta files (#26)

  bsgiles73

  authored
  8ff7464

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• feat(IPVC-2264): add files used for gene_id backfill (#27)

  bsgiles73

  authored
  d57cb71

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Commits on Apr 24, 2024

• IPVC-2379: add necessary NCBI input files to download config (#25)

  bsgiles73

  authored
  c2af389

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Commits on Apr 18, 2024

• feat(IPVC-2264) add gene_id to UTA models (#24)

  bsgiles73

  authored
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Commits on Apr 17, 2024

• feat(IPVC-2331): add splign manual steps (#23)

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  sptaylor

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  bsgiles73

  authored
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Commits on Apr 15, 2024

• feat(IPVC-2335): add the load-seqinfo step (#22)

  sptaylor

  authored
  8431f27

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Commits on Apr 9, 2024

• feat(IPVC-2283): mitochondrial transcript workflow (#20)

  nvta1209

  authored
  d65d764

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Commits on Apr 8, 2024

• feat(IPVC-2280): add codon_table to transcript + migration (#21)

  sptaylor

  authored
  a072cb1

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Commits on Apr 5, 2024

• feat(IPVC-2276): skip accessions from gff that are not in the tx_info file, log missing acs to file (#18)

  sptaylor

  authored
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