Stars
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Basic Guide for the Differential Expression Analysis of RNAseq data using DESeq2
Guide for the Differential Expression Analysis of RNAseq data using edgeR
Guide for the Differential Expression Analysis of RNAseq data using limma
Guide for the Differential Expression Analysis of RNAseq data using DESeq2
PhD-Level Course for Single-Molecule Sequencing Technologies
Contains materials in development for the nanopore base modification course at the Earlham Institute running in 2025
Contains materials used for the nanopore base modification course at the Earlham Institute that ran in 2024
Forkable teaching materials for course on working with data in R
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
Analysis code for a cohort of Nanopore-sequenced tumours.
Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
bwa-mem2 / mm2-fast
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
Data and analysis for NA12878 genome on nanopore
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
UCSC Nanopore group's software pipeline for reference-based sequence analysis
Structural Variant Identification Method using Long Reads
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
A collection of Galaxy-related training material
Melbourne Bioinformatics documentation in markdown format
Evaluating Nanopore-based bacterial variant calling
minimal example implementations for bioinformatics workflow managers