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Commits on Jan 31, 2025

• ci: build and test (#210)

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• refactor: make STAR task more user friendly (#205)

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• ci: pytest action waits on build action and remove SEQERR reference (#208)

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• fix: package deletion (#209)

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Commits on Jan 30, 2025

• fix: add token to environment for gh cli, jq query update, digest comparison update (#206)

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• feat: docker re-architecture (#203)

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Commits on Jan 29, 2025

• ci: add Python lint and format checks (#201)

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Commits on Jan 24, 2025

• docs: Create pull_request_template.md (#200)

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Commits on Jan 21, 2025

• chore: fix RedundantInputAssignment (#199)

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Commits on Dec 20, 2024

• chore: remove link to (bad) doc site (#198)

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• fix: set docs_dir for mkdocs (#197)

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• fix: github pages CI (#196)

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• feat: add methylation pipelines (#184)

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Commits on Dec 19, 2024

• fix(FlagFilter): allow single digit decimals (#195)

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Commits on Dec 18, 2024

• revise: changes needed for wdl-doc compatibility (#191)

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Commits on Dec 16, 2024

• chore: consistently use .R[1,2] instead of _R[1,2] (#193)

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Commits on Nov 26, 2024

• fix: tests and bugs and CI (#187)

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Commits on Nov 25, 2024

• chore: migrate scrnaseq to external repo (#188)

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• docs: kraken warning (#186)

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• docs: example jsons (#183)

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Commits on Nov 20, 2024

• docs(README): clarification that command is mocked

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Commits on Nov 11, 2024

• chore: Lint fixes (#175)

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Commits on Nov 1, 2024

• Mem allocations (and other miscellaneous improvements) (#178)

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Commits on Oct 7, 2024

• fix: remove unused variable and call (#181)

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Commits on Sep 26, 2024

• revise: task-templates.wdl -> task-examples.wdl.template

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Commits on Sep 19, 2024

• ci: use public Sprocket action (#180)

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Commits on Jul 17, 2024

• chore: add blank CHANGELOGs (#174)

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Commits on Jul 16, 2024

• chore: Clean up various lints (#173)

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Commits on Jul 15, 2024

• Update `outputs` key in `meta` section (#164)

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Commits on Jul 1, 2024

• chore: fix input spacing (#163)

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Commits on Jun 25, 2024

• chore: apply changes for lint (#162)

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Commits on Jun 18, 2024

• chore: SJMotifs -> SpliceJunctionMotifs (#161)

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Commits on Jun 12, 2024

• test: Additional tests (#105)

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Commits on Jun 6, 2024

• feat: multiqc configs (#143)

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Commits on May 30, 2024

• chore: single -> double quotes (#159)

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