BAMtoGFF, matrix density, plot visualizations

ChIP-seq peak-calling, QC and differential analysis pipeline.

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

sicer2

ROSE: RANK ORDERING OF SUPER-ENHANCERS

Abraham's lab - ChipSeq Pipeline

A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

Rust crates for working with Workflow Description Language (WDL) documents.

Source code for the WARDEN DNAnexus apps

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

Workflow Description Language - Specification and Implementations

Tools (written in C using htslib) for manipulating next-generation sequencing data

Sample code for ModMyPi's Programmable Xmas Tree

Official website for St. Jude CAB

Somatic indel discovery tool for tumor RNA-Seq data.

Utility for merging RNA-seq expression counts files from St. Jude Cloud.

📢 Various README templates & tips on writing high-quality documentation that people want to read.

Application tutorials for St. Jude Cloud.

An automatic parser of Amazon Transcribe jobs which outputs to HTML and DOCX.