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Bayesian Optimization and Design of Experiments

Python 410 59 Updated Nov 10, 2025

R package to read and write Frictionless Data Packages

R 31 11 Updated Oct 8, 2025

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

R 10 3 Updated Jul 28, 2025

Repository holding the code for the drugfindR R package

R 8 3 Updated Oct 27, 2025

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Nextflow 63 37 Updated Jun 3, 2025

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

Nextflow 56 15 Updated Sep 30, 2025

Palantir R SDK

R 12 2 Updated Sep 30, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,554 1,050 Updated Oct 23, 2025

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

12 3 Updated Jun 5, 2018

Create beautiful Gantt charts with ggplot2

R 3 1 Updated Mar 8, 2022

A collection of Machine Learning datasets for health care and beyond

R 55 9 Updated Nov 23, 2023

Palantir Python SDK

Python 48 12 Updated Sep 30, 2025

✨ Hexagon sticker in R

R 786 175 Updated Oct 29, 2025

Syncs Markdown files to Confluence

Python 313 65 Updated Aug 21, 2024

Create curved text paths in ggplot2

R 636 25 Updated Jul 21, 2025

interactive plots for differential expression analysis

JavaScript 34 10 Updated Jun 19, 2025

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

R 1,211 86 Updated Jan 3, 2025

An R package for tabulating and summarising categorical variables.

R 35 1 Updated Aug 21, 2023

Make your data science report a website. In 10 minutes.

HTML 33 6 Updated Oct 31, 2021

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 1,131 811 Updated Nov 5, 2025

Tandem Mass Tag Normalization, Expression Analysis, and statistical Testing

R 2 3 Updated Aug 4, 2022

Interactively annotate ggplots

R 312 22 Updated Oct 7, 2021

omniCLIP is a CLIP-Seq peak caller

Python 1 1 Updated Oct 11, 2019

omniCLIP is a CLIP-Seq peak caller

Python 1 Updated Mar 28, 2022
Jupyter Notebook 11 9 Updated Mar 19, 2025

a pipeline to map CLIP-seq data

Python 2 Updated Mar 3, 2020

R Package as interface to rsync

R 20 4 Updated Oct 20, 2025

A tidy interface for coverage analysis

R 31 5 Updated Feb 18, 2020

R's data.table package extends data.frame:

R 3,805 1,017 Updated Nov 11, 2025
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