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@rnabioco RNA Bioscience Initiative (RBI)

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    93 repositories

    • charmer-rs

      Public
      TUI to monitor snakemake pipelines
      snakemakesnakemake-pipeline
      Rust
      •
      MIT License
      •0•0•0•2•Updated Dec 19, 2025Dec 19, 2025

    • aform-rs

      Public
      TUI for Stockholm MSA viz/edit
      msastockholmtui-rs
      Rust
      •0•0•2•0•Updated Dec 18, 2025Dec 18, 2025

    • 2a-peptide-search

      Public
      HMM models of the 2A peptide and DB search results
      Python
      •0•0•2•1•Updated Dec 13, 2025Dec 13, 2025

    • cpp11bigwig

      Public
      Read bigWig and bigBed files in R
      C
      •
      Other
      •1•3•0•0•Updated Dec 11, 2025Dec 11, 2025

    • valr

      Public
      Genome Interval Arithmetic in R
      genomeinterval-arithmeticbedtools
      R
      •
      Other
      •24•94•2•0•Updated Dec 10, 2025Dec 10, 2025

    • hesselberthlab.org

      Public
      Lab website
      HTML
      •
      MIT License
      •0•0•0•1•Updated Dec 7, 2025Dec 7, 2025

    • squiggy-positron

      Public
      Positron extension to visualize POD5 nanopore signals
      visualizationapinanoporepositronsquiggle
      TypeScript
      •
      MIT License
      •0•0•18•5•Updated Dec 6, 2025Dec 6, 2025

    • alpine-positron

      Public
      Set up Alpine to use Positron
      Shell
      •0•2•0•0•Updated Nov 13, 2025Nov 13, 2025

    • morrison-chronic-chikv

      Public
      Quantification of CHIKV RNA at 28 dpi using scRNA-seq
      HTML
      •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • aa-tRNA-seq-pipeline

      Public
      Snakemake pipeline to process nanopore aa-tRNA-seq data
      rna-seqsnakemakenanopore-sequencing
      Python
      •
      MIT License
      •2•3•15•6•Updated Nov 8, 2025Nov 8, 2025

    • morrison-chronic-chikv-xenium

      Public
      Quantification of CHIKV RNA at 28 dpi using spatial transcriptomics
      R
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • molb-7950

      Public
      MOLB 7950: Informatics and Statistics for Molecular Biology
      HTML
      •0•4•9•1•Updated Oct 20, 2025Oct 20, 2025

    • aa-tRNA-seq

      Public
      Public-facing repo for aa-tRNA-seq pre-print
      Python
      •0•2•0•0•Updated Oct 8, 2025Oct 8, 2025

    • remora

      Public
      Methylation/modified base calling separated from basecalling.
      Python
      •
      Other
      •24•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • ucsc_snapshots

      Public
      Robotically fetch images for specified regions from the UCSC Genome Browser
      Python
      •0•5•0•0•Updated Aug 16, 2025Aug 16, 2025

    • pneuro-onc-browsers

      Public
      Pediatric Neuro-oncology Cell Atlas
      TeX
      •
      MIT License
      •0•0•1•0•Updated Aug 11, 2025Aug 11, 2025

    • raer

      Public
      Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
      rna-seq-analysissingle-cell-rna-seqbioconductor-packagesingle-cell-analysis
      C
      •
      Other
      •2•10•2•0•Updated Jul 15, 2025Jul 15, 2025

    • antigen-exchange-xenium

      Public
      Xenium analysis for Sheridan et al.
      R
      •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • antigen-exchange

      Public
      Analysis for Sheridan et al.
      R
      •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • scraps

      Public
      Single-cell RNA Processing Software
      Python
      •
      MIT License
      •4•11•7•0•Updated Jun 17, 2025Jun 17, 2025

    • purrr

      Public
      A functional programming toolkit for R
      R
      •
      Other
      •295•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • yeastgenes

      Public
      R data package for yeast gene expression
      R
      •
      Other
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

    • clustifyr

      Public
      Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
      rna-seqclustersmarker-genessingle-cell-rna-seqassign-identities
      R
      •
      MIT License
      •15•124•0•0•Updated Apr 16, 2025Apr 16, 2025

    • aa-tRNA-seq-analysis-template

      Public
      Quarto template for aa-tRNA-seq anaysis
      rna-seq-analysisquarto-template
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

    • nihexporter

      Public
      An R data package for NIH EXPORTER data
      spendinggrantsnih
      R
      •
      Other
      •13•15•1•0•Updated Mar 8, 2025Mar 8, 2025

    • modkit

      Public
      A bioinformatics tool for working with modified bases
      Rust
      •
      Other
      •20•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • squigualiser

      Public
      Visualise and analyse nanopore (ONT) raw signals
      Python
      •
      MIT License
      •4•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • WarpDemuX

      Public
      direct RNA nanopore sequencing barcode design and demultiplexing
      Jupyter Notebook
      •
      Other
      •5•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • rbitemplate

      Public
      RBI pkgdown template
      R
      •
      Other
      •0•0•1•0•Updated Jan 12, 2025Jan 12, 2025

    • detectrms-rs

      Public
      Fast detection of rna modifications sites
      Rust
      •0•1•1•0•Updated Dec 24, 2024Dec 24, 2024