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    191 repositories

    • emevo

      Public
      Simluate Embodied Evolution of Agents
      Jupyter Notebook
      •
      Apache License 2.0
      •0•3•0•0•Updated Jan 8, 2026Jan 8, 2026

    • BioinfoUgrp

      Public
      OIST Bioinfo user group
      bioinformaticshpcoist
      Shell
      •2•11•1•0•Updated Jan 6, 2026Jan 6, 2026

    • BioinfoUgrp_UnixGoodies_Images

      Public
      Singularity images with cool Unix tools to be exported as modules in HPC clusters
      Dockerfile
      •0•3•1•0•Updated Jan 6, 2026Jan 6, 2026

    • neuro-workflow

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Dec 19, 2025Dec 19, 2025

    • NEXTNetPy

      Public
      Python wrapper for the NEXTNet library for efficient simulation of epidemics on complex networks
      C++
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • NEXTNet

      Public
      C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks
      C++
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • Chakraborty_GoCD_Configs

      Public
      Repository containing pipeline configuration files in YAML format for GoCD server configuration.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

    • subarashii-annotation-pipeline

      Public
      1007 genomes annotation pipeline
      Shell
      •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • sequence-space-dimension

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • gene-context

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Nov 14, 2025Nov 14, 2025

    • plessy_nf_GenomicBreaks

      Public
      Draft Nextflow pipeline to convert alignment files and extract basic stats.
      Nextflow
      •1•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • GenomicBreaks

      Public
      Pairwise Alignment Breakpoint Analysis
      rcomparative-genomics
      R
      •
      Other
      •3•6•19•0•Updated Nov 12, 2025Nov 12, 2025

    • nf-core_configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •339•0•0•1•Updated Nov 12, 2025Nov 12, 2025

    • mlss2027okinawa

      Public
      Machine Learning Summer School 2027
      HTML
      •
      MIT License
      •0•1•0•0•Updated Nov 8, 2025Nov 8, 2025

    • smartphone-robot-firmware

      Public
      Firmware for rp2040 used by smartphone-robots
      C
      •0•1•4•0•Updated Oct 31, 2025Oct 31, 2025

    • smartphone-robot-android

      Public
      Android development for smartphone-robot
      Java
      •1•0•10•1•Updated Oct 30, 2025Oct 30, 2025

    • smartphone-robot-cad

      Public
      All 3D CAD and PCB design files for smartphone-robot project.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • KonstantinovU_reflectometry

      Public
      Data for paper "Sensitive detection of the Rydberg transition in trapped electrons on liquid helium using radio-frequency reflectometry"
      0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • LuscombeU_nfcore_pairgenomealign_fork

      Public
      Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
      Nextflow
      •
      MIT License
      •4•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • iSciComp

      Public
      JupyterBook: Introduction to Scientific Computation
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•4•0•0•Updated Oct 22, 2025Oct 22, 2025

    • Tanaka_K_Lab_public

      Public
      Tanaka K. Public Repository
      0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • VisualStimulation

      Public
      matlab gui for vstim with psychophysics toolbox
      Jupyter Notebook
      •0•5•0•0•Updated Oct 9, 2025Oct 9, 2025

    • mcmc-date-container

      Public
      Conteinerized version of mcmc-date
      Shell
      •0•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • PhiNetv2

      Public
      Python
      •
      Other
      •1•7•0•0•Updated Sep 29, 2025Sep 29, 2025

    • LuscombeU_stlrepeatmask

      Public
      Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project
      genomerepeatsscramblingmaskingoist
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • LuscombeU_stlpreprocess

      Public
      Download and pre-process genomes for the Scrambling in the Tree of Life project
      genomedownloadfilterscramblingoist
      Nextflow
      •
      MIT License
      •0•0•2•0•Updated Sep 16, 2025Sep 16, 2025

    • BioinfoUgrp_DebianMed_Images

      Public
      GitHub actions workflow to create Debian Med images for OISTs bioinformatics user group.
      Dockerfile
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • LuscombeU_Oikopleura_genome_assemblies

      Public
      List of github links for Oikopleura genome assemblies
      0•2•0•0•Updated Aug 28, 2025Aug 28, 2025

    • optinist

      Public
      calcium imaging pipeline tool
      neurosciencecalcium-imaging
      TypeScript
      •
      GNU General Public License v3.0
      •15•48•26•7•Updated Aug 18, 2025Aug 18, 2025

    • BrainComputation

      Public
      Brain Computation: A Hands-on Guidebook
      Jupyter Notebook
      •3•11•0•0•Updated Jul 31, 2025Jul 31, 2025