Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Dec 24, 2025Dec 24, 2025

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1ome

  HTML

  •5•1•3•0•Updated Dec 24, 2025Dec 24, 2025

• schemas

  Public
  A repository containing the published OME schemas for www.openmicroscopy.org

  XSLT

  •

  Creative Commons Attribution 4.0 International

  •4•0•1•3•Updated Dec 22, 2025Dec 22, 2025

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •4•2•1•3•Updated Dec 22, 2025Dec 22, 2025

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •65•218•74•13•Updated Dec 22, 2025Dec 22, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonjavaimage+ 3databaseserveromero

  Java

  •

  GNU General Public License v2.0

  •103•214•23•4•Updated Dec 22, 2025Dec 22, 2025

• omero-documentation

  Public

  ome/omero-documentation’s past year of commit activity
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•23•31•9•Updated Dec 22, 2025Dec 22, 2025

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1omero

  Java

  •

  GNU General Public License v2.0

  •10•0•2•1•Updated Dec 19, 2025Dec 19, 2025

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •19•8•2•0•Updated Dec 19, 2025Dec 19, 2025

• ngff-spec

  Public
  (EXPERIMENTAL) Investigation of splitting NGFF specifications out of ome/ngff

  Python

  •4•9•2•6•Updated Dec 19, 2025Dec 19, 2025

• omero-guides

  Public
  Guides for using OMERO

  docshelpomero+ 3guidesmanualsomero-training

  Python

  •

  BSD 2-Clause "Simplified" License

  •6•1•14•2•Updated Dec 19, 2025Dec 19, 2025

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•5•Updated Dec 19, 2025Dec 19, 2025

• devspace

  Public
  Continuous integration tool for OME projects

  dockerjenkinscontinuous-integration+ 2omerodevs

  Shell

  •17•19•21•3•Updated Dec 18, 2025Dec 18, 2025

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •10•1•15•2•Updated Dec 18, 2025Dec 18, 2025

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •15•0•30•2•Updated Dec 18, 2025Dec 18, 2025

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •14•8•36•2•Updated Dec 18, 2025Dec 18, 2025

• omero-common

  Public
  Gradle project containing common utilities for OMERO

  libraryutilomero

  Java

  •

  GNU General Public License v2.0

  •11•1•1•2•Updated Dec 18, 2025Dec 18, 2025

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •37•19•62•8•Updated Dec 18, 2025Dec 18, 2025

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  Python

  •

  Other

  •59•148•116•19•Updated Dec 18, 2025Dec 18, 2025

• omero-guide-upload

  Public
  BSD 2-Clause "Simplified" License

  •4•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• ansible-role-omero-searchengine

  Public
  Python

  •1•0•0•1•Updated Dec 18, 2025Dec 18, 2025

• omeroweb-install

  Public
  Jinja

  •11•2•4•1•Updated Dec 18, 2025Dec 18, 2025

• omero-guide-scripts

  Public
  BSD 2-Clause "Simplified" License

  •4•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• devagent-docker

  Public
  Jenkins agent container based on omero-ssh-systemd

  agentdockerjenkins

  Shell

  •7•1•0•0•Updated Dec 17, 2025Dec 17, 2025

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •6•4•3•3•Updated Dec 15, 2025Dec 15, 2025

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•18•20•12•Updated Dec 15, 2025Dec 15, 2025

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1ngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•42•29•6•Updated Dec 15, 2025Dec 15, 2025

• omero-test-infra

  Public
  Test infrastructure for decoupled repositories

  dockerinfrastructuretest+ 2travisomero

  Shell

  •

  BSD 2-Clause "Simplified" License

  •15•4•12•2•Updated Dec 12, 2025Dec 12, 2025

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •4•2•15•11•Updated Dec 12, 2025Dec 12, 2025

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  javametadataimage+ 7format-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •250•408•161•11•Updated Dec 11, 2025Dec 11, 2025