Repositories list

• SICER2

  Public
  Our re-implementation of SICER broad peak calling algorithm

  Python

  •0•4•1•0•Updated Sep 12, 2025Sep 12, 2025

• uORF_annotator

  Public
  Python

  •0•2•0•0•Updated May 21, 2025May 21, 2025

• pregnancy_meta_analysis

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Mar 21, 2025Mar 21, 2025

• RMAhunter

  Public
  genomevariant-callingexome

  HTML

  •0•9•0•1•Updated Mar 25, 2024Mar 25, 2024

• caller_benchmark

  Public
  Companion repository for the human variant calling pipeline comparison paper

  R

  •

  GNU General Public License v3.0

  •2•11•0•0•Updated Feb 21, 2022Feb 21, 2022

• covid19-exome

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 12, 2022Feb 12, 2022

• russian_exome_pipeline

  Public
  Description of tools and docker image for the Russian exome pipeline

  Python

  •0•3•0•0•Updated Nov 2, 2021Nov 2, 2021

• guar_genotypes

  Public
  Repository containing data and code for the guar genotyping project

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 5, 2021May 5, 2021

• ukb_phewas

  Public
  Phenome-wide search for pleiotropic loci

  C++

  •2•3•0•0•Updated Jan 25, 2021Jan 25, 2021

• Sibelia

  Public
  Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.

  C++

  •

  Other

  •17•70•16•0•Updated Oct 29, 2020Oct 29, 2020

• weswgs

  Public
  coveragesequencingwhole-exome-sequencing+ 1whole-genome-sequencing

  R

  •1•4•0•0•Updated Jul 30, 2020Jul 30, 2020

• afpaper

  Public
  Scripts and data processing notes for Russian exome sequencing AF paper

  russian-specificwhole-exome-sequencingexome-sequencing+ 1allele-frequencies

  R

  •0•1•0•0•Updated Jul 24, 2020Jul 24, 2020

• GMA

  Public
  C

  •0•0•0•0•Updated Jun 17, 2019Jun 17, 2019

• Gematria

  Public
  Fast and easy tool for genome mappability estimation

  Python

  •1•2•0•0•Updated Jun 16, 2019Jun 16, 2019

• genequery

  Public
  Scripts and pre-processing for GeneQuery database

  R

  •0•0•0•0•Updated Jun 6, 2019Jun 6, 2019

• EM_ampliseq_analysis

  Public
  Analysis scripts for EM ampliseq manuscript

  R

  •0•0•0•0•Updated Feb 12, 2019Feb 12, 2019

• diabetes

  Public
  Whole-exome study of obesity and diabetes in Russian population

  R

  •0•1•0•0•Updated Aug 17, 2018Aug 17, 2018

• myodiff

  Public
  Working scripts and processed data for myodifferentiation paper

  0•0•0•0•Updated Dec 26, 2017Dec 26, 2017

• rnaseq

  Public
  Shell

  •0•1•0•0•Updated Sep 3, 2017Sep 3, 2017

• rma

  Public
  RMA paper scripts

  Python

  •0•0•0•0•Updated Jun 22, 2017Jun 22, 2017

• exome

  Public
  A complete pipeline for cohort-oriented exome processing and annotation.

  Shell

  •1•2•0•0•Updated Sep 8, 2016Sep 8, 2016

• SBW_scripts

  Public
  Scripts originally taken from Amazon clowd version of SBW-2016 setup.

  Shell

  •0•1•0•0•Updated Jun 4, 2016Jun 4, 2016

• radish_transcriptome_at

  Public
  R

  •0•0•0•0•Updated Apr 4, 2016Apr 4, 2016

• microarray

  Public
  Examples of microarray processing R scripts

  0•0•0•0•Updated Apr 2, 2016Apr 2, 2016

• django_openid_provider

  Public
  Forked from https://bitbucket.org/romke/django_openid_provider

  Python

  •3•0•0•0•Updated Jul 31, 2015Jul 31, 2015

• proteomics2014

  Public
  Proteomics Homeworks, Fall 2014

  Python

  •2•0•0•0•Updated Feb 2, 2015Feb 2, 2015

• bi2014-drosophila-melanogaster

  Public
  Python

  •0•0•0•0•Updated Jan 4, 2015Jan 4, 2015

• bi2014-neurospora-crassa

  Public
  Python

  •0•0•0•0•Updated Dec 13, 2014Dec 13, 2014

• bi2014-mycoplasma-genitalium

  Public
  Python

  •0•0•10•0•Updated Dec 6, 2014Dec 6, 2014

• bi2014-coffea-canephora

  Public
  Rust

  •2•0•0•0•Updated Dec 5, 2014Dec 5, 2014