Repositories list

• emperor

  Public
  Emperor a tool for the analysis and visualization of large microbial ecology datasets

  visualizationpythonbioinformatics+ 4microbiomeordinationemperorbiplots

  JavaScript

  •

  Other

  •48•54•63•2•Updated Dec 21, 2025Dec 21, 2025

• qurro

  Public
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

  visualizationbioinformaticsmicrobiome+ 1qiime

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •10•34•124•0•Updated Apr 4, 2025Apr 4, 2025

• empress

  Public
  A fast and scalable phylogenetic tree viewer for microbiome data analysis

  visualizationbioinformaticsmicrobiome+ 6ordinationphylogenyqiimebiplotqiime2tree-plot

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •32•55•142•8•Updated Aug 4, 2024Aug 4, 2024

• DEICODE

  Public
  Robust Aitchison PCA from sparse count data

  JavaScript

  •

  Other

  •17•37•13•2•Updated Aug 17, 2022Aug 17, 2022

• Evident-initial-demo

  Public archive
  Elucidating sampling effort for microbial analysis studies

  JavaScript

  •12•7•16•0•Updated Aug 23, 2018Aug 23, 2018

• sage-emperor

  Public
  Emperor implementation in the SAGE2 framework

  JavaScript

  •

  Other

  •1•1•0•1•Updated Apr 29, 2016Apr 29, 2016

• SitePainter

  Public
  A tool for exploring biogeographical patterns

  JavaScript

  •

  Other

  •3•3•6•0•Updated Jun 19, 2015Jun 19, 2015