Repositories list

• PheWeb-Beta-Matrix-Builder

  Public
  Crawls GWAS summary stats for many phenotypes from PheWeb site and builds relevant matrix.

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 15, 2025Nov 15, 2025

• Automatic-Cell-Typing

  Public
  An automatic cell type identification pipeline for spatial transcriptomics(CosMx and Xenium).

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

• QuantaBot

  Public
  UROP2024-Dongeun Kim

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• CellSegmentation

  Public
  Python

  •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

• Multi-context-TWAS

  Public
  R

  •0•1•0•0•Updated Aug 28, 2025Aug 28, 2025

• Loopsim

  Public
  Enrichment Analysis of Chromosome Conformation Capture with Fast Empirical Distribution Simulation

  Python

  •

  MIT License

  •0•2•0•0•Updated Jul 20, 2025Jul 20, 2025

• single-cell_pipeline

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• JDM_skin_RNAseq

  Public
  R

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• PN_microbiome_analysis

  Public
  R

  •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• GenomicAnalysis

  Public
  Python

  •2•1•0•0•Updated Apr 11, 2024Apr 11, 2024

• GTF

  Public
  C++

  •1•1•0•0•Updated Feb 28, 2024Feb 28, 2024

• Genetics

  Public
  C++

  •0•2•0•0•Updated Sep 6, 2022Sep 6, 2022

• SNP2HLA_UM

  Public
  Fortran

  •0•1•2•0•Updated Aug 24, 2022Aug 24, 2022

• DrugPrediction

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• RareDiseaseAnalysis

  Public
  Shell

  •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

• Gene_Simulation

  Public
  HTML

  •0•0•0•0•Updated Dec 14, 2020Dec 14, 2020

• Expression

  Public
  R

  •0•0•0•0•Updated Oct 7, 2020Oct 7, 2020

• Integration-for-scRNA-seq-bulk-RNA-seq-data

  Public
  R

  •0•0•0•0•Updated Sep 15, 2020Sep 15, 2020

• LiteratureMiningTool

  Public
  Prolog

  •1•1•0•0•Updated Aug 28, 2020Aug 28, 2020

• Skin-specific-Co-expression

  Public
  R

  •0•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• ATAC-seq

  Public
  Python

  •0•0•0•0•Updated Nov 26, 2018Nov 26, 2018