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Pull requests: nf-core/taxprofiler

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Pull requests list

Sourmash profiler [DO NOT MERGE YET] enhancement Improvement for existing functionality WIP Work in progress
#404 opened Oct 17, 2023 by vmikk • Draft updated Sep 11, 2024
2 of 12 tasks
1
Add a feature to generate samplesheet for differentialabundance
#546 opened Oct 15, 2024 by LilyAnderssonLee • Draft updated Oct 29, 2024
11 tasks
4
Start adding framework for altenrative host-removal tools
#646 opened Sep 11, 2025 by jfy133 • Draft updated Sep 23, 2025
11 tasks
10
migrating from publishDir to output
#654 opened Oct 9, 2025 by LilyAnderssonLee • Draft updated Oct 16, 2025
11 tasks
2
generate metaval samplesheet
#664 opened Nov 12, 2025 by LilyAnderssonLee • Draft updated Dec 12, 2025
11 tasks
36
Add more nf tests
#655 opened Oct 9, 2025 by sofstam Loading… updated Jan 8, 2026
11 tasks
62
Solve file name conflict with mixed SE and PE runs for a single sample
#675 opened Dec 18, 2025 by LilyAnderssonLee Loading… updated Jan 8, 2026
11 tasks
13
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