From 856f12fa224688a876df1f8bf57d581c68e3a4bd Mon Sep 17 00:00:00 2001
From: Kevin Backhouse <kevinbackhouse@github.com>
Date: Tue, 2 Sep 2025 16:00:59 +0100
Subject: [PATCH 1/2] Use branch-deploy action to determine who is allowed to
 trigger this workflow.

---
 .github/workflows/changelog.yml               | 21 ++++++++-----------
 .../workflows/update-textual-snapshots.yml    | 17 ++++++++-------
 2 files changed, 19 insertions(+), 19 deletions(-)

diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml
index 981476d917..141a5a8679 100644
--- a/.github/workflows/changelog.yml
+++ b/.github/workflows/changelog.yml
@@ -1,24 +1,21 @@
 name: Update CHANGELOG.md
 on:
   issue_comment:
-    types: [created]
-  pull_request_target:
-    types: [opened]
-    branches:
-      - dev
+    types: [created]  # Add "@nf-core-bot changelog" as a PR comment to trigger this workflow.
 
 jobs:
   update_changelog:
     runs-on: ubuntu-latest
-    # Run if comment is on a PR with the main repo, and if it contains the magic keywords.
-    # Or run on PR creation, unless asked otherwise in the title.
-    if: |
-      github.repository_owner == 'nf-core' && (
-        github.event_name == 'pull_request_target' ||
-        github.event.issue.pull_request && startsWith(github.event.comment.body, '@nf-core-bot changelog')
-      )
 
     steps:
+      - name: branch-deploy
+        id: branch-deploy
+        uses: github/branch-deploy@c9fcc362bdcea69eecac6578dde245cd5e3a55bf # v10.4.3
+        with:
+          trigger: "@nf-core-bot changelog"
+          reaction: "eyes"
+          stable_branch: "dev"
+
       - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:
           token: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }}
diff --git a/.github/workflows/update-textual-snapshots.yml b/.github/workflows/update-textual-snapshots.yml
index 5f25ce955d..939079abd2 100644
--- a/.github/workflows/update-textual-snapshots.yml
+++ b/.github/workflows/update-textual-snapshots.yml
@@ -1,18 +1,21 @@
 name: Update Textual snapshots from a comment
 on:
   issue_comment:
-    types: [created]
+    types: [created]  # Add "@nf-core-bot update textual snapshots" as a PR comment to trigger this workflow.
 
 jobs:
   update-snapshots:
-    # Only run if comment is on a PR with the main repo, and if it contains the magic keywords
-    if: >
-      contains(github.event.comment.html_url, '/pull/') &&
-      contains(github.event.comment.body, '@nf-core-bot') &&
-      contains(github.event.comment.body, 'update textual snapshots') &&
-      github.repository == 'nf-core/tools'
     runs-on: ubuntu-latest
+
     steps:
+      - name: branch-deploy
+        id: branch-deploy
+        uses: github/branch-deploy@c9fcc362bdcea69eecac6578dde245cd5e3a55bf # v10.4.3
+        with:
+          trigger: "@nf-core-bot update textual snapshots"
+          reaction: "eyes"
+          stable_branch: "dev"
+
       # Use the @nf-core-bot token to check out so we can push later
       - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:

From e97ed07614088c919316cc19b2b91ae298af5666 Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Tue, 30 Sep 2025 15:09:42 +0000
Subject: [PATCH 2/2] [automated] Fix code linting

---
 .github/workflows/changelog.yml                | 2 +-
 .github/workflows/update-textual-snapshots.yml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml
index 141a5a8679..946f1e58d7 100644
--- a/.github/workflows/changelog.yml
+++ b/.github/workflows/changelog.yml
@@ -1,7 +1,7 @@
 name: Update CHANGELOG.md
 on:
   issue_comment:
-    types: [created]  # Add "@nf-core-bot changelog" as a PR comment to trigger this workflow.
+    types: [created] # Add "@nf-core-bot changelog" as a PR comment to trigger this workflow.
 
 jobs:
   update_changelog:
diff --git a/.github/workflows/update-textual-snapshots.yml b/.github/workflows/update-textual-snapshots.yml
index 939079abd2..17eba479cd 100644
--- a/.github/workflows/update-textual-snapshots.yml
+++ b/.github/workflows/update-textual-snapshots.yml
@@ -1,7 +1,7 @@
 name: Update Textual snapshots from a comment
 on:
   issue_comment:
-    types: [created]  # Add "@nf-core-bot update textual snapshots" as a PR comment to trigger this workflow.
+    types: [created] # Add "@nf-core-bot update textual snapshots" as a PR comment to trigger this workflow.
 
 jobs:
   update-snapshots: