From 00db9c700aeeeeeacb0f23f95591dfed0c021652 Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 21 Oct 2024 17:08:45 +0200 Subject: [PATCH 1/3] use correct profile options for sfw test command --- nf_core/__main__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/__main__.py b/nf_core/__main__.py index 94c15521c1..356b16f7f1 100644 --- a/nf_core/__main__.py +++ b/nf_core/__main__.py @@ -1371,7 +1371,7 @@ def command_subworkflows_create(ctx, subworkflow, directory, author, force, migr ) @click.option( "--profile", - type=click.Choice(["none", "singularity"]), + type=click.Choice(["docker", "singularity", "conda"]), default=None, help="Run tests with a specific profile", ) From ea03ff2d88e5d332d6e65fbc842614d374205f31 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Mon, 21 Oct 2024 15:11:38 +0000 Subject: [PATCH 2/3] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 45772a4902..34b20ab13c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -23,6 +23,7 @@ - chore(deps): update pre-commit hook pre-commit/mirrors-mypy to v1.12.0 ([#3230](https://github.com/nf-core/tools/pull/3230)) - chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0 ([#3229](https://github.com/nf-core/tools/pull/3229)) - Update python:3.12-slim Docker digest to 032c526 ([#3232](https://github.com/nf-core/tools/pull/3232)) +- use correct profile options for sfw test command ([#3233](https://github.com/nf-core/tools/pull/3233)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11] From 2ba0d30efb741b692aeaa39946d323c558d0a0a9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Matthias=20H=C3=B6rtenhuber?= Date: Tue, 22 Oct 2024 10:20:31 +0200 Subject: [PATCH 3/3] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 34b20ab13c..95b7757c06 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -23,7 +23,7 @@ - chore(deps): update pre-commit hook pre-commit/mirrors-mypy to v1.12.0 ([#3230](https://github.com/nf-core/tools/pull/3230)) - chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0 ([#3229](https://github.com/nf-core/tools/pull/3229)) - Update python:3.12-slim Docker digest to 032c526 ([#3232](https://github.com/nf-core/tools/pull/3232)) -- use correct profile options for sfw test command ([#3233](https://github.com/nf-core/tools/pull/3233)) +- use correct `--profile` options for `nf-core subworkflows test` ([#3233](https://github.com/nf-core/tools/pull/3233)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]